View of /trunk/gadgetMerluza2015/model/hke.printfile

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; Printer file for South hake model
; Compare with catch length distribution
; Standart output
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;;; SUMMARY PRINTER
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;;LIKELIHOOD SUMMARY; Summary of likelihood component that gives component name, weight and score for area and timestep
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[component]
type		likelihoodsummaryprinter
printfile	../out/hke.lik.summ.out
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;;; LIKELIHOOD PRINTER
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;; FLEETS
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[component]
type		likelihoodprinter
likelihood	Land1.ldist
printfile	../out/expected.landings1.ld
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	Land.ldist
printfile	../out/expected.landings.ld
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	cdLand.ldist
printfile	../out/expected.cdlandings.ld
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	Disc.ldist
printfile	../out/expected.discards.ld
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	SpDem.ldist
printfile	../out/expected-sp_surv.ld
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	PtDem.ldist
printfile	../out/expected-pt_surv.ld
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	CdAut.ldist
printfile	../out/expected-cdAut_surv.ld
;yearsandsteps	all	all
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;; INDEX
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[component]
type		likelihoodprinter
likelihood	SpIndex15cm.1
printfile	../out/SpINDEX15.1.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	SpIndex15cm.2
printfile	../out/SpINDEX15.2.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	SpIndex15cm.3
printfile	../out/SpINDEX15.3.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	SpIndex15cm.4
printfile	../out/SpINDEX15.4.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	PtIndex15cm.1
printfile	../out/PtINDEX15.1.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	PtIndex15cm.2
printfile	../out/PtINDEX15.2.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	PtIndex15cm.3
printfile	../out/PtINDEX15.3.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	PtIndex15cm.4
printfile	../out/PtINDEX15.4.print
;yearsandsteps	all	all
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;; CPUE
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[component]
type		likelihoodprinter
likelihood	SpCPUE15cm.1
printfile	../out/SpCPUE15.1.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	SpCPUE15cm.2
printfile	../out/SpCPUE15.2.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	SpCPUE15cm.3
printfile	../out/SpCPUE15.3.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	PtCPUE15cm.1
printfile	../out/PtCPUE15.1.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	PtCPUE15cm.2
printfile	../out/PtCPUE15.2.print
;yearsandsteps	all	all
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[component]
type		likelihoodprinter
likelihood	PtCPUE15cm.3
printfile	../out/PtCPUE15.3.print
;yearsandsteps	all	all
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;;; STOCK PRINTER
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;; TOTAL BIOMASS BY AGE AND QUARTER (N MATRIX) - EJ
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[component]
type		stockprinter
stocknames 	hke
areaaggfile	../agg/area.agg	
ageaggfile	../agg/hke.age.agg		
lenaggfile	../agg/hke.alllen.agg
printfile	../out/hkeAgeN.out
printatstart	1      ;at the start of the timestep. O default at the end
yearsandsteps	all all
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;; TOTAL BIOMASS BY LENGTH AND QUARTER (N MATRIX)- EJ
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[component]
type		stockprinter
stocknames 	hke
areaaggfile	../agg/area.agg	
ageaggfile	../agg/hke.allage.agg		
lenaggfile	../agg/hke.len1.agg
printfile	../out/hkeLenN.out
printatstart	1      ;at the start of the timestep. O default at the end
yearsandsteps	all all
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;; DATA FOR LEN DISTRIBUTION PLOT - TOTAL BIOMASS BY 2CM_LENGTH AND QUARTER (N MATRIX) - EJ 
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[component]
type		stockprinter
stocknames 	hke
areaaggfile	../agg/area.agg	
ageaggfile	../agg/hke.allage.agg		
lenaggfile	../agg/hke.len2.agg ; numbers and mean weight at LEN2CM (from 4 to 130 cm)
printfile	../out/NWLen2cm.report
printatstart	1      ;at the start of the timestep. O default at the end
yearsandsteps	all	all
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;;; STOCK STANDARD PRINTER
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;; TOTAL STANDARD BIOMASS
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[component]
type		stockstdprinter
stockname	hke
scale		1     ;no scale
printfile	../out/hke.std.out
printatstart	1      ;at the start of the timestep. O default at the end
yearsandsteps	all all
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;;; PREDATOR PREY PRINTER
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; TOTAL CATCH BY AGE AND QUARTER (C MATRIX) - EJ
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[component]
type                 predatorpreyprinter
predatornames        land1 land2 landCd disc 
preynames            hke    
areaaggfile          ../agg/area.agg  
ageaggfile           ../agg/hke.age.agg 
lenaggfile           ../agg/hke.alllen.agg 
printfile            ../out/hkeAgeC.out	
yearsandsteps        all all 	
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;; LANDINGS BY AGE AND QUARTER (L MATRIX) - EJ
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[component]
type                 predatorpreyprinter
predatornames        land1 land2 landCd   
preynames            hke     
areaaggfile          ../agg/area.agg  
ageaggfile           ../agg/hke.age.agg  
lenaggfile           ../agg/hke.alllen.agg 
printfile            ../out/hkeAgeL.out	
yearsandsteps        all all 
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;; DISCARDS BY AGE AND QUARTER (D MATRIX) - EJ
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[component]
type                 predatorpreyprinter
predatornames        disc  
preynames            hke     
areaaggfile          ../agg/area.agg 
ageaggfile           ../agg/hke.age.agg  
lenaggfile           ../agg/hke.alllen.agg 
printfile            ../out/hkeAgeD.out	
yearsandsteps        all all 	
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;; TOTAL CATCH BY LENGTH AND QUARTER (C MATRIX) - EJ
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[component]
type                 predatorpreyprinter
predatornames        land1 land2 landCd disc  
preynames            hke    
areaaggfile          ../agg/area.agg
ageaggfile           ../agg/hke.allage.agg 
lenaggfile           ../agg/hke.len1.agg
printfile            ../out/hkeLenC.out
yearsandsteps        all all 
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;; LANDINGS BY LENGTH AND QUARTER (L MATRIX) - EJ
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[component]
type                 predatorpreyprinter
predatornames        land1 land2 landCd
preynames            hke      
areaaggfile          ../agg/area.agg  
ageaggfile           ../agg/hke.allage.agg   
lenaggfile           ../agg/hke.len1.agg 
printfile            ../out/hkeLenL.out	
yearsandsteps        all all 	
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;; DISCARDS BY LENGTH AND QUARTER (D MATRIX) - EJ 
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[component]
type                 predatorpreyprinter
predatornames        disc  
preynames            hke      
areaaggfile          ../agg/area.agg  
ageaggfile           ../agg/hke.allage.agg   
lenaggfile           ../agg/hke.len1.agg 
printfile            ../out/hkeLenD.out
yearsandsteps        all all
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;; DATA FOR LEN DISTRIBUTION PLOT - TOTAL CATCH BY 2CM_LENGTH AND QUARTER (C MATRIX) - EJ
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[component]
type                 predatorpreyprinter
predatornames        land1 land2 landCd disc 
preynames            hke     
areaaggfile          ../agg/area.agg 
ageaggfile           ../agg/hke.allage.agg   
lenaggfile           ../agg/hke.len2.agg ; numbers and mean weight at LEN2CM (from 4 to 130 cm)
printfile            ../out/FCatLen2cm.report	
yearsandsteps        all  all
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;; DATA FOR LEN DISTRIBUTION PLOT - DISCARDS BY 2CM_LENGTH AND QUARTER (C MATRIX) - EJ
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[component]
type                 predatorpreyprinter
predatornames        disc 
preynames            hke   
areaaggfile          ../agg/area.agg 
ageaggfile           ../agg/hke.allage.agg   
lenaggfile           ../agg/hke.len2.agg ; numbers and mean weight at LEN2CM (from 4 to 130 cm)
printfile            ../out/FDisLen2cm.report
yearsandsteps        all  all