Annotation of /trunk/gadgetMerluza2015/model/hke.printfile

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1 :	ulcessvp	10	;
2 :			;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
3 :			; Printer file for South hake model
4 :			; Compare with catch length distribution
5 :			; Standart output
6 :			;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
7 :			;
8 :			;
9 :			;
10 :			;
11 :			;
12 :			;;; SUMMARY PRINTER
13 :			;
14 :			;;LIKELIHOOD SUMMARY; Summary of likelihood component that gives component name, weight and score for area and timestep
15 :			;
16 :			[component]
17 :			type likelihoodsummaryprinter
18 :			printfile ../out/hke.lik.summ.out
19 :			;
20 :			;
21 :			;
22 :			;
23 :			;
24 :			;;; LIKELIHOOD PRINTER
25 :			;
26 :			;; FLEETS
27 :			;
28 :			[component]
29 :			type likelihoodprinter
30 :			likelihood Land1.ldist
31 :			printfile ../out/expected.landings1.ld
32 :			;yearsandsteps all all
33 :			;
34 :			[component]
35 :			type likelihoodprinter
36 :			likelihood Land.ldist
37 :			printfile ../out/expected.landings.ld
38 :			;yearsandsteps all all
39 :			;
40 :			[component]
41 :			type likelihoodprinter
42 :			likelihood cdLand.ldist
43 :			printfile ../out/expected.cdlandings.ld
44 :			;yearsandsteps all all
45 :			;
46 :			[component]
47 :			type likelihoodprinter
48 :			likelihood Disc.ldist
49 :			printfile ../out/expected.discards.ld
50 :			;yearsandsteps all all
51 :			;
52 :			[component]
53 :			type likelihoodprinter
54 :			likelihood SpDem.ldist
55 :			printfile ../out/expected-sp_surv.ld
56 :			;yearsandsteps all all
57 :			;
58 :			[component]
59 :			type likelihoodprinter
60 :			likelihood PtDem.ldist
61 :			printfile ../out/expected-pt_surv.ld
62 :			;yearsandsteps all all
63 :			;
64 :			[component]
65 :			type likelihoodprinter
66 :			likelihood CdAut.ldist
67 :			printfile ../out/expected-cdAut_surv.ld
68 :			;yearsandsteps all all
69 :			;
70 :			;
71 :			;
72 :			;; INDEX
73 :			;
74 :			[component]
75 :			type likelihoodprinter
76 :			likelihood SpIndex15cm.1
77 :			printfile ../out/SpINDEX15.1.print
78 :			;yearsandsteps all all
79 :			;
80 :			[component]
81 :			type likelihoodprinter
82 :			likelihood SpIndex15cm.2
83 :			printfile ../out/SpINDEX15.2.print
84 :			;yearsandsteps all all
85 :			;
86 :			[component]
87 :			type likelihoodprinter
88 :			likelihood SpIndex15cm.3
89 :			printfile ../out/SpINDEX15.3.print
90 :			;yearsandsteps all all
91 :			;
92 :			[component]
93 :			type likelihoodprinter
94 :			likelihood SpIndex15cm.4
95 :			printfile ../out/SpINDEX15.4.print
96 :			;yearsandsteps all all
97 :			;
98 :			[component]
99 :			type likelihoodprinter
100 :			likelihood PtIndex15cm.1
101 :			printfile ../out/PtINDEX15.1.print
102 :			;yearsandsteps all all
103 :			;
104 :			[component]
105 :			type likelihoodprinter
106 :			likelihood PtIndex15cm.2
107 :			printfile ../out/PtINDEX15.2.print
108 :			;yearsandsteps all all
109 :			;
110 :			[component]
111 :			type likelihoodprinter
112 :			likelihood PtIndex15cm.3
113 :			printfile ../out/PtINDEX15.3.print
114 :			;yearsandsteps all all
115 :			;
116 :			[component]
117 :			type likelihoodprinter
118 :			likelihood PtIndex15cm.4
119 :			printfile ../out/PtINDEX15.4.print
120 :			;yearsandsteps all all
121 :			;
122 :			;
123 :			;
124 :			;; CPUE
125 :			;
126 :			[component]
127 :			type likelihoodprinter
128 :			likelihood SpCPUE15cm.1
129 :			printfile ../out/SpCPUE15.1.print
130 :			;yearsandsteps all all
131 :			;
132 :			[component]
133 :			type likelihoodprinter
134 :			likelihood SpCPUE15cm.2
135 :			printfile ../out/SpCPUE15.2.print
136 :			;yearsandsteps all all
137 :			;
138 :			[component]
139 :			type likelihoodprinter
140 :			likelihood SpCPUE15cm.3
141 :			printfile ../out/SpCPUE15.3.print
142 :			;yearsandsteps all all
143 :			;
144 :			[component]
145 :			type likelihoodprinter
146 :			likelihood PtCPUE15cm.1
147 :			printfile ../out/PtCPUE15.1.print
148 :			;yearsandsteps all all
149 :			;
150 :			[component]
151 :			type likelihoodprinter
152 :			likelihood PtCPUE15cm.2
153 :			printfile ../out/PtCPUE15.2.print
154 :			;yearsandsteps all all
155 :			;
156 :			[component]
157 :			type likelihoodprinter
158 :			likelihood PtCPUE15cm.3
159 :			printfile ../out/PtCPUE15.3.print
160 :			;yearsandsteps all all
161 :			;
162 :			;
163 :			;
164 :			;
165 :			;
166 :			;;; STOCK PRINTER
167 :			;
168 :			;; TOTAL BIOMASS BY AGE AND QUARTER (N MATRIX) - EJ
169 :			;
170 :			[component]
171 :			type stockprinter
172 :			stocknames hke
173 :			areaaggfile ../agg/area.agg
174 :			ageaggfile ../agg/hke.age.agg
175 :			lenaggfile ../agg/hke.alllen.agg
176 :			printfile ../out/hkeAgeN.out
177 :			printatstart 1 ;at the start of the timestep. O default at the end
178 :			yearsandsteps all all
179 :			;
180 :			;; TOTAL BIOMASS BY LENGTH AND QUARTER (N MATRIX)- EJ
181 :			;
182 :			[component]
183 :			type stockprinter
184 :			stocknames hke
185 :			areaaggfile ../agg/area.agg
186 :			ageaggfile ../agg/hke.allage.agg
187 :			lenaggfile ../agg/hke.len1.agg
188 :			printfile ../out/hkeLenN.out
189 :			printatstart 1 ;at the start of the timestep. O default at the end
190 :			yearsandsteps all all
191 :			;
192 :			;; DATA FOR LEN DISTRIBUTION PLOT - TOTAL BIOMASS BY 2CM_LENGTH AND QUARTER (N MATRIX) - EJ
193 :			;
194 :			[component]
195 :			type stockprinter
196 :			stocknames hke
197 :			areaaggfile ../agg/area.agg
198 :			ageaggfile ../agg/hke.allage.agg
199 :			lenaggfile ../agg/hke.len2.agg ; numbers and mean weight at LEN2CM (from 4 to 130 cm)
200 :			printfile ../out/NWLen2cm.report
201 :			printatstart 1 ;at the start of the timestep. O default at the end
202 :			yearsandsteps all all
203 :			;
204 :			;
205 :			;
206 :			;
207 :			;
208 :			;;; STOCK STANDARD PRINTER
209 :			;
210 :			;; TOTAL STANDARD BIOMASS
211 :			;
212 :			[component]
213 :			type stockstdprinter
214 :			stockname hke
215 :			scale 1 ;no scale
216 :			printfile ../out/hke.std.out
217 :			printatstart 1 ;at the start of the timestep. O default at the end
218 :			yearsandsteps all all
219 :			;
220 :			;
221 :			;
222 :			;
223 :			;
224 :			;;; PREDATOR PREY PRINTER
225 :			;
226 :			; TOTAL CATCH BY AGE AND QUARTER (C MATRIX) - EJ
227 :			;
228 :			[component]
229 :			type predatorpreyprinter
230 :			predatornames land1 land2 landCd disc
231 :			preynames hke
232 :			areaaggfile ../agg/area.agg
233 :			ageaggfile ../agg/hke.age.agg
234 :			lenaggfile ../agg/hke.alllen.agg
235 :			printfile ../out/hkeAgeC.out
236 :			yearsandsteps all all
237 :			;
238 :			;; LANDINGS BY AGE AND QUARTER (L MATRIX) - EJ
239 :			;
240 :			[component]
241 :			type predatorpreyprinter
242 :			predatornames land1 land2 landCd
243 :			preynames hke
244 :			areaaggfile ../agg/area.agg
245 :			ageaggfile ../agg/hke.age.agg
246 :			lenaggfile ../agg/hke.alllen.agg
247 :			printfile ../out/hkeAgeL.out
248 :			yearsandsteps all all
249 :			;
250 :			;; DISCARDS BY AGE AND QUARTER (D MATRIX) - EJ
251 :			;
252 :			[component]
253 :			type predatorpreyprinter
254 :			predatornames disc
255 :			preynames hke
256 :			areaaggfile ../agg/area.agg
257 :			ageaggfile ../agg/hke.age.agg
258 :			lenaggfile ../agg/hke.alllen.agg
259 :			printfile ../out/hkeAgeD.out
260 :			yearsandsteps all all
261 :			;
262 :			;
263 :			;
264 :			;; TOTAL CATCH BY LENGTH AND QUARTER (C MATRIX) - EJ
265 :			;
266 :			[component]
267 :			type predatorpreyprinter
268 :			predatornames land1 land2 landCd disc
269 :			preynames hke
270 :			areaaggfile ../agg/area.agg
271 :			ageaggfile ../agg/hke.allage.agg
272 :			lenaggfile ../agg/hke.len1.agg
273 :			printfile ../out/hkeLenC.out
274 :			yearsandsteps all all
275 :			;
276 :			;; LANDINGS BY LENGTH AND QUARTER (L MATRIX) - EJ
277 :			;
278 :			[component]
279 :			type predatorpreyprinter
280 :			predatornames land1 land2 landCd
281 :			preynames hke
282 :			areaaggfile ../agg/area.agg
283 :			ageaggfile ../agg/hke.allage.agg
284 :			lenaggfile ../agg/hke.len1.agg
285 :			printfile ../out/hkeLenL.out
286 :			yearsandsteps all all
287 :			;
288 :			;; DISCARDS BY LENGTH AND QUARTER (D MATRIX) - EJ
289 :			;
290 :			[component]
291 :			type predatorpreyprinter
292 :			predatornames disc
293 :			preynames hke
294 :			areaaggfile ../agg/area.agg
295 :			ageaggfile ../agg/hke.allage.agg
296 :			lenaggfile ../agg/hke.len1.agg
297 :			printfile ../out/hkeLenD.out
298 :			yearsandsteps all all
299 :			;
300 :			;
301 :			;
302 :			;; DATA FOR LEN DISTRIBUTION PLOT - TOTAL CATCH BY 2CM_LENGTH AND QUARTER (C MATRIX) - EJ
303 :			;
304 :			[component]
305 :			type predatorpreyprinter
306 :			predatornames land1 land2 landCd disc
307 :			preynames hke
308 :			areaaggfile ../agg/area.agg
309 :			ageaggfile ../agg/hke.allage.agg
310 :			lenaggfile ../agg/hke.len2.agg ; numbers and mean weight at LEN2CM (from 4 to 130 cm)
311 :			printfile ../out/FCatLen2cm.report
312 :			yearsandsteps all all
313 :			;
314 :			;; DATA FOR LEN DISTRIBUTION PLOT - DISCARDS BY 2CM_LENGTH AND QUARTER (C MATRIX) - EJ
315 :			;
316 :			[component]
317 :			type predatorpreyprinter
318 :			predatornames disc
319 :			preynames hke
320 :			areaaggfile ../agg/area.agg
321 :			ageaggfile ../agg/hke.allage.agg
322 :			lenaggfile ../agg/hke.len2.agg ; numbers and mean weight at LEN2CM (from 4 to 130 cm)
323 :			printfile ../out/FDisLen2cm.report
324 :			yearsandsteps all all
325 :
326 :
327 :

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