1 : |
ulcessvp |
10 |
;
|
2 : |
|
|
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
|
3 : |
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; Printer file for South hake model
|
4 : |
|
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; Compare with catch length distribution
|
5 : |
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; Standart output
|
6 : |
|
|
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
|
7 : |
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;
|
8 : |
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;
|
9 : |
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;
|
10 : |
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;
|
11 : |
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;
|
12 : |
|
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;;; SUMMARY PRINTER
|
13 : |
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;
|
14 : |
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;;LIKELIHOOD SUMMARY; Summary of likelihood component that gives component name, weight and score for area and timestep
|
15 : |
|
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;
|
16 : |
|
|
[component]
|
17 : |
|
|
type likelihoodsummaryprinter
|
18 : |
|
|
printfile ../out/hke.lik.summ.out
|
19 : |
|
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;
|
20 : |
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;
|
21 : |
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;
|
22 : |
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;
|
23 : |
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;
|
24 : |
|
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;;; LIKELIHOOD PRINTER
|
25 : |
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;
|
26 : |
|
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;; FLEETS
|
27 : |
|
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;
|
28 : |
|
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[component]
|
29 : |
|
|
type likelihoodprinter
|
30 : |
|
|
likelihood Land1.ldist
|
31 : |
|
|
printfile ../out/expected.landings1.ld
|
32 : |
|
|
;yearsandsteps all all
|
33 : |
|
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;
|
34 : |
|
|
[component]
|
35 : |
|
|
type likelihoodprinter
|
36 : |
|
|
likelihood Land.ldist
|
37 : |
|
|
printfile ../out/expected.landings.ld
|
38 : |
|
|
;yearsandsteps all all
|
39 : |
|
|
;
|
40 : |
|
|
[component]
|
41 : |
|
|
type likelihoodprinter
|
42 : |
|
|
likelihood cdLand.ldist
|
43 : |
|
|
printfile ../out/expected.cdlandings.ld
|
44 : |
|
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;yearsandsteps all all
|
45 : |
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|
;
|
46 : |
|
|
[component]
|
47 : |
|
|
type likelihoodprinter
|
48 : |
|
|
likelihood Disc.ldist
|
49 : |
|
|
printfile ../out/expected.discards.ld
|
50 : |
|
|
;yearsandsteps all all
|
51 : |
|
|
;
|
52 : |
|
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[component]
|
53 : |
|
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type likelihoodprinter
|
54 : |
|
|
likelihood SpDem.ldist
|
55 : |
|
|
printfile ../out/expected-sp_surv.ld
|
56 : |
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;yearsandsteps all all
|
57 : |
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;
|
58 : |
|
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[component]
|
59 : |
|
|
type likelihoodprinter
|
60 : |
|
|
likelihood PtDem.ldist
|
61 : |
|
|
printfile ../out/expected-pt_surv.ld
|
62 : |
|
|
;yearsandsteps all all
|
63 : |
|
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;
|
64 : |
|
|
[component]
|
65 : |
|
|
type likelihoodprinter
|
66 : |
|
|
likelihood CdAut.ldist
|
67 : |
|
|
printfile ../out/expected-cdAut_surv.ld
|
68 : |
|
|
;yearsandsteps all all
|
69 : |
|
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;
|
70 : |
|
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;
|
71 : |
|
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;
|
72 : |
|
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;; INDEX
|
73 : |
|
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;
|
74 : |
|
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[component]
|
75 : |
|
|
type likelihoodprinter
|
76 : |
|
|
likelihood SpIndex15cm.1
|
77 : |
|
|
printfile ../out/SpINDEX15.1.print
|
78 : |
|
|
;yearsandsteps all all
|
79 : |
|
|
;
|
80 : |
|
|
[component]
|
81 : |
|
|
type likelihoodprinter
|
82 : |
|
|
likelihood SpIndex15cm.2
|
83 : |
|
|
printfile ../out/SpINDEX15.2.print
|
84 : |
|
|
;yearsandsteps all all
|
85 : |
|
|
;
|
86 : |
|
|
[component]
|
87 : |
|
|
type likelihoodprinter
|
88 : |
|
|
likelihood SpIndex15cm.3
|
89 : |
|
|
printfile ../out/SpINDEX15.3.print
|
90 : |
|
|
;yearsandsteps all all
|
91 : |
|
|
;
|
92 : |
|
|
[component]
|
93 : |
|
|
type likelihoodprinter
|
94 : |
|
|
likelihood SpIndex15cm.4
|
95 : |
|
|
printfile ../out/SpINDEX15.4.print
|
96 : |
|
|
;yearsandsteps all all
|
97 : |
|
|
;
|
98 : |
|
|
[component]
|
99 : |
|
|
type likelihoodprinter
|
100 : |
|
|
likelihood PtIndex15cm.1
|
101 : |
|
|
printfile ../out/PtINDEX15.1.print
|
102 : |
|
|
;yearsandsteps all all
|
103 : |
|
|
;
|
104 : |
|
|
[component]
|
105 : |
|
|
type likelihoodprinter
|
106 : |
|
|
likelihood PtIndex15cm.2
|
107 : |
|
|
printfile ../out/PtINDEX15.2.print
|
108 : |
|
|
;yearsandsteps all all
|
109 : |
|
|
;
|
110 : |
|
|
[component]
|
111 : |
|
|
type likelihoodprinter
|
112 : |
|
|
likelihood PtIndex15cm.3
|
113 : |
|
|
printfile ../out/PtINDEX15.3.print
|
114 : |
|
|
;yearsandsteps all all
|
115 : |
|
|
;
|
116 : |
|
|
[component]
|
117 : |
|
|
type likelihoodprinter
|
118 : |
|
|
likelihood PtIndex15cm.4
|
119 : |
|
|
printfile ../out/PtINDEX15.4.print
|
120 : |
|
|
;yearsandsteps all all
|
121 : |
|
|
;
|
122 : |
|
|
;
|
123 : |
|
|
;
|
124 : |
|
|
;; CPUE
|
125 : |
|
|
;
|
126 : |
|
|
[component]
|
127 : |
|
|
type likelihoodprinter
|
128 : |
|
|
likelihood SpCPUE15cm.1
|
129 : |
|
|
printfile ../out/SpCPUE15.1.print
|
130 : |
|
|
;yearsandsteps all all
|
131 : |
|
|
;
|
132 : |
|
|
[component]
|
133 : |
|
|
type likelihoodprinter
|
134 : |
|
|
likelihood SpCPUE15cm.2
|
135 : |
|
|
printfile ../out/SpCPUE15.2.print
|
136 : |
|
|
;yearsandsteps all all
|
137 : |
|
|
;
|
138 : |
|
|
[component]
|
139 : |
|
|
type likelihoodprinter
|
140 : |
|
|
likelihood SpCPUE15cm.3
|
141 : |
|
|
printfile ../out/SpCPUE15.3.print
|
142 : |
|
|
;yearsandsteps all all
|
143 : |
|
|
;
|
144 : |
|
|
[component]
|
145 : |
|
|
type likelihoodprinter
|
146 : |
|
|
likelihood PtCPUE15cm.1
|
147 : |
|
|
printfile ../out/PtCPUE15.1.print
|
148 : |
|
|
;yearsandsteps all all
|
149 : |
|
|
;
|
150 : |
|
|
[component]
|
151 : |
|
|
type likelihoodprinter
|
152 : |
|
|
likelihood PtCPUE15cm.2
|
153 : |
|
|
printfile ../out/PtCPUE15.2.print
|
154 : |
|
|
;yearsandsteps all all
|
155 : |
|
|
;
|
156 : |
|
|
[component]
|
157 : |
|
|
type likelihoodprinter
|
158 : |
|
|
likelihood PtCPUE15cm.3
|
159 : |
|
|
printfile ../out/PtCPUE15.3.print
|
160 : |
|
|
;yearsandsteps all all
|
161 : |
|
|
;
|
162 : |
|
|
;
|
163 : |
|
|
;
|
164 : |
|
|
;
|
165 : |
|
|
;
|
166 : |
|
|
;;; STOCK PRINTER
|
167 : |
|
|
;
|
168 : |
|
|
;; TOTAL BIOMASS BY AGE AND QUARTER (N MATRIX) - EJ
|
169 : |
|
|
;
|
170 : |
|
|
[component]
|
171 : |
|
|
type stockprinter
|
172 : |
|
|
stocknames hke
|
173 : |
|
|
areaaggfile ../agg/area.agg
|
174 : |
|
|
ageaggfile ../agg/hke.age.agg
|
175 : |
|
|
lenaggfile ../agg/hke.alllen.agg
|
176 : |
|
|
printfile ../out/hkeAgeN.out
|
177 : |
|
|
printatstart 1 ;at the start of the timestep. O default at the end
|
178 : |
|
|
yearsandsteps all all
|
179 : |
|
|
;
|
180 : |
|
|
;; TOTAL BIOMASS BY LENGTH AND QUARTER (N MATRIX)- EJ
|
181 : |
|
|
;
|
182 : |
|
|
[component]
|
183 : |
|
|
type stockprinter
|
184 : |
|
|
stocknames hke
|
185 : |
|
|
areaaggfile ../agg/area.agg
|
186 : |
|
|
ageaggfile ../agg/hke.allage.agg
|
187 : |
|
|
lenaggfile ../agg/hke.len1.agg
|
188 : |
|
|
printfile ../out/hkeLenN.out
|
189 : |
|
|
printatstart 1 ;at the start of the timestep. O default at the end
|
190 : |
|
|
yearsandsteps all all
|
191 : |
|
|
;
|
192 : |
|
|
;; DATA FOR LEN DISTRIBUTION PLOT - TOTAL BIOMASS BY 2CM_LENGTH AND QUARTER (N MATRIX) - EJ
|
193 : |
|
|
;
|
194 : |
|
|
[component]
|
195 : |
|
|
type stockprinter
|
196 : |
|
|
stocknames hke
|
197 : |
|
|
areaaggfile ../agg/area.agg
|
198 : |
|
|
ageaggfile ../agg/hke.allage.agg
|
199 : |
|
|
lenaggfile ../agg/hke.len2.agg ; numbers and mean weight at LEN2CM (from 4 to 130 cm)
|
200 : |
|
|
printfile ../out/NWLen2cm.report
|
201 : |
|
|
printatstart 1 ;at the start of the timestep. O default at the end
|
202 : |
|
|
yearsandsteps all all
|
203 : |
|
|
;
|
204 : |
|
|
;
|
205 : |
|
|
;
|
206 : |
|
|
;
|
207 : |
|
|
;
|
208 : |
|
|
;;; STOCK STANDARD PRINTER
|
209 : |
|
|
;
|
210 : |
|
|
;; TOTAL STANDARD BIOMASS
|
211 : |
|
|
;
|
212 : |
|
|
[component]
|
213 : |
|
|
type stockstdprinter
|
214 : |
|
|
stockname hke
|
215 : |
|
|
scale 1 ;no scale
|
216 : |
|
|
printfile ../out/hke.std.out
|
217 : |
|
|
printatstart 1 ;at the start of the timestep. O default at the end
|
218 : |
|
|
yearsandsteps all all
|
219 : |
|
|
;
|
220 : |
|
|
;
|
221 : |
|
|
;
|
222 : |
|
|
;
|
223 : |
|
|
;
|
224 : |
|
|
;;; PREDATOR PREY PRINTER
|
225 : |
|
|
;
|
226 : |
|
|
; TOTAL CATCH BY AGE AND QUARTER (C MATRIX) - EJ
|
227 : |
|
|
;
|
228 : |
|
|
[component]
|
229 : |
|
|
type predatorpreyprinter
|
230 : |
|
|
predatornames land1 land2 landCd disc
|
231 : |
|
|
preynames hke
|
232 : |
|
|
areaaggfile ../agg/area.agg
|
233 : |
|
|
ageaggfile ../agg/hke.age.agg
|
234 : |
|
|
lenaggfile ../agg/hke.alllen.agg
|
235 : |
|
|
printfile ../out/hkeAgeC.out
|
236 : |
|
|
yearsandsteps all all
|
237 : |
|
|
;
|
238 : |
|
|
;; LANDINGS BY AGE AND QUARTER (L MATRIX) - EJ
|
239 : |
|
|
;
|
240 : |
|
|
[component]
|
241 : |
|
|
type predatorpreyprinter
|
242 : |
|
|
predatornames land1 land2 landCd
|
243 : |
|
|
preynames hke
|
244 : |
|
|
areaaggfile ../agg/area.agg
|
245 : |
|
|
ageaggfile ../agg/hke.age.agg
|
246 : |
|
|
lenaggfile ../agg/hke.alllen.agg
|
247 : |
|
|
printfile ../out/hkeAgeL.out
|
248 : |
|
|
yearsandsteps all all
|
249 : |
|
|
;
|
250 : |
|
|
;; DISCARDS BY AGE AND QUARTER (D MATRIX) - EJ
|
251 : |
|
|
;
|
252 : |
|
|
[component]
|
253 : |
|
|
type predatorpreyprinter
|
254 : |
|
|
predatornames disc
|
255 : |
|
|
preynames hke
|
256 : |
|
|
areaaggfile ../agg/area.agg
|
257 : |
|
|
ageaggfile ../agg/hke.age.agg
|
258 : |
|
|
lenaggfile ../agg/hke.alllen.agg
|
259 : |
|
|
printfile ../out/hkeAgeD.out
|
260 : |
|
|
yearsandsteps all all
|
261 : |
|
|
;
|
262 : |
|
|
;
|
263 : |
|
|
;
|
264 : |
|
|
;; TOTAL CATCH BY LENGTH AND QUARTER (C MATRIX) - EJ
|
265 : |
|
|
;
|
266 : |
|
|
[component]
|
267 : |
|
|
type predatorpreyprinter
|
268 : |
|
|
predatornames land1 land2 landCd disc
|
269 : |
|
|
preynames hke
|
270 : |
|
|
areaaggfile ../agg/area.agg
|
271 : |
|
|
ageaggfile ../agg/hke.allage.agg
|
272 : |
|
|
lenaggfile ../agg/hke.len1.agg
|
273 : |
|
|
printfile ../out/hkeLenC.out
|
274 : |
|
|
yearsandsteps all all
|
275 : |
|
|
;
|
276 : |
|
|
;; LANDINGS BY LENGTH AND QUARTER (L MATRIX) - EJ
|
277 : |
|
|
;
|
278 : |
|
|
[component]
|
279 : |
|
|
type predatorpreyprinter
|
280 : |
|
|
predatornames land1 land2 landCd
|
281 : |
|
|
preynames hke
|
282 : |
|
|
areaaggfile ../agg/area.agg
|
283 : |
|
|
ageaggfile ../agg/hke.allage.agg
|
284 : |
|
|
lenaggfile ../agg/hke.len1.agg
|
285 : |
|
|
printfile ../out/hkeLenL.out
|
286 : |
|
|
yearsandsteps all all
|
287 : |
|
|
;
|
288 : |
|
|
;; DISCARDS BY LENGTH AND QUARTER (D MATRIX) - EJ
|
289 : |
|
|
;
|
290 : |
|
|
[component]
|
291 : |
|
|
type predatorpreyprinter
|
292 : |
|
|
predatornames disc
|
293 : |
|
|
preynames hke
|
294 : |
|
|
areaaggfile ../agg/area.agg
|
295 : |
|
|
ageaggfile ../agg/hke.allage.agg
|
296 : |
|
|
lenaggfile ../agg/hke.len1.agg
|
297 : |
|
|
printfile ../out/hkeLenD.out
|
298 : |
|
|
yearsandsteps all all
|
299 : |
|
|
;
|
300 : |
|
|
;
|
301 : |
|
|
;
|
302 : |
|
|
;; DATA FOR LEN DISTRIBUTION PLOT - TOTAL CATCH BY 2CM_LENGTH AND QUARTER (C MATRIX) - EJ
|
303 : |
|
|
;
|
304 : |
|
|
[component]
|
305 : |
|
|
type predatorpreyprinter
|
306 : |
|
|
predatornames land1 land2 landCd disc
|
307 : |
|
|
preynames hke
|
308 : |
|
|
areaaggfile ../agg/area.agg
|
309 : |
|
|
ageaggfile ../agg/hke.allage.agg
|
310 : |
|
|
lenaggfile ../agg/hke.len2.agg ; numbers and mean weight at LEN2CM (from 4 to 130 cm)
|
311 : |
|
|
printfile ../out/FCatLen2cm.report
|
312 : |
|
|
yearsandsteps all all
|
313 : |
|
|
;
|
314 : |
|
|
;; DATA FOR LEN DISTRIBUTION PLOT - DISCARDS BY 2CM_LENGTH AND QUARTER (C MATRIX) - EJ
|
315 : |
|
|
;
|
316 : |
|
|
[component]
|
317 : |
|
|
type predatorpreyprinter
|
318 : |
|
|
predatornames disc
|
319 : |
|
|
preynames hke
|
320 : |
|
|
areaaggfile ../agg/area.agg
|
321 : |
|
|
ageaggfile ../agg/hke.allage.agg
|
322 : |
|
|
lenaggfile ../agg/hke.len2.agg ; numbers and mean weight at LEN2CM (from 4 to 130 cm)
|
323 : |
|
|
printfile ../out/FDisLen2cm.report
|
324 : |
|
|
yearsandsteps all all
|
325 : |
|
|
|
326 : |
|
|
|
327 : |
|
|
|