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agomez |
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#include "transition.h" |
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#include "errorhandler.h" |
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#include "keeper.h" |
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#include "readword.h" |
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#include "gadget.h" |
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#include "global.h" |
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Transition::Transition(CommentStream& infile, const IntVector& areas, int Age,
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const LengthGroupDivision* const lgrpdiv, const char* givenname,
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const TimeClass* const TimeInfo, Keeper* const keeper)
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: HasName(givenname), LivesOnAreas(areas), age(Age) {
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int i = 0;
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istagged = 0;
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ratioscale = 1.0; //JMB used to scale the ratios to ensure that they sum to 1
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char text[MaxStrLength];
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strncpy(text, "", MaxStrLength);
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keeper->addString("transition");
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LgrpDiv = new LengthGroupDivision(*lgrpdiv);
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if (LgrpDiv->Error())
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handle.logMessage(LOGFAIL, "Error in transition - failed to create length group");
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infile >> text >> ws;
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if (strcasecmp(text, "transitionstocksandratios") != 0)
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handle.logFileUnexpected(LOGFAIL, "transitionstocksandratios", text);
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infile >> text >> ws;
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while (strcasecmp(text, "transitionstep") != 0 && !infile.eof()) {
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transitionStockNames.resize(new char[strlen(text) + 1]);
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strcpy(transitionStockNames[i], text);
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transitionRatio.resize(1, keeper);
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if (!(infile >> transitionRatio[i]))
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handle.logFileMessage(LOGFAIL, "invalid format for transition ratio");
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transitionRatio[i].Inform(keeper);
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infile >> text >> ws;
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i++;
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}
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if (infile.eof())
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handle.logFileEOFMessage(LOGFAIL);
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infile >> transitionStep >> ws;
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if (transitionStep < 1 || transitionStep > TimeInfo->numSteps())
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handle.logFileMessage(LOGFAIL, "invalid transition step", transitionStep);
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keeper->clearLast();
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}
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Transition::~Transition() {
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int i;
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for (i = 0; i < transitionStockNames.Size(); i++)
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delete[] transitionStockNames[i];
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for (i = 0; i < CI.Size(); i++)
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delete CI[i];
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delete LgrpDiv;
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}
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void Transition::setStock(StockPtrVector& stockvec) {
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int i, j, index;
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for (i = 0; i < transitionStockNames.Size(); i++)
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for (j = 0; j < transitionStockNames.Size(); j++)
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if ((strcasecmp(transitionStockNames[i], transitionStockNames[j]) == 0) && (i != j))
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handle.logMessage(LOGFAIL, "Error in transition - repeated stock", transitionStockNames[i]);
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for (i = 0; i < stockvec.Size(); i++)
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for (j = 0; j < transitionStockNames.Size(); j++)
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if (strcasecmp(stockvec[i]->getName(), transitionStockNames[j]) == 0)
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transitionStocks.resize(stockvec[i]);
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if (transitionStocks.Size() != transitionStockNames.Size()) {
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handle.logMessage(LOGWARN, "Error in transition - failed to match transition stocks");
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for (i = 0; i < stockvec.Size(); i++)
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handle.logMessage(LOGWARN, "Error in transition - found stock", stockvec[i]->getName());
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for (i = 0; i < transitionStockNames.Size(); i++)
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handle.logMessage(LOGWARN, "Error in transition - looking for stock", transitionStockNames[i]);
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handle.logMessage(LOGFAIL, ""); //JMB this will exit gadget
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}
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//JMB ensure that the ratio vector is indexed in the right order
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ratioindex.resize(transitionStocks.Size(), 0);
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for (i = 0; i < transitionStocks.Size(); i++)
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for (j = 0; j < transitionStockNames.Size(); j++)
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if (strcasecmp(transitionStocks[i]->getName(), transitionStockNames[j]) == 0)
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ratioindex[i] = j;
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double mlength = 9999.0;
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for (i = 0; i < transitionStocks.Size(); i++) {
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CI.resize(new ConversionIndex(LgrpDiv, transitionStocks[i]->getLengthGroupDiv()));
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if (CI[i]->Error())
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handle.logMessage(LOGFAIL, "Error in transition - error when checking length structure");
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index = 0;
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for (j = 0; j < areas.Size(); j++)
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if (!transitionStocks[i]->isInArea(areas[j]))
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index++;
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if (index != 0)
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handle.logMessage(LOGWARN, "Warning in transition - transition stock isnt defined on all areas");
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if (transitionStocks[i]->getLengthGroupDiv()->minLength() < mlength)
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mlength = transitionStocks[i]->getLengthGroupDiv()->minLength();
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}
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minTransitionLength = LgrpDiv->numLengthGroup(mlength);
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IntVector minlv(2, 0);
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IntVector sizev(2, LgrpDiv->numLengthGroups());
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Storage.resize(areas.Size(), age, minlv, sizev);
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for (i = 0; i < Storage.Size(); i++)
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Storage[i].setToZero();
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}
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void Transition::Print(ofstream& outfile) const {
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int i;
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outfile << "\nTransition\n\tNames of transition stocks:";
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for (i = 0; i < transitionStockNames.Size(); i++)
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outfile << sep << transitionStockNames[i];
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outfile << "\n\tRatio moving into each stock:";
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for (i = 0; i < transitionRatio.Size(); i++)
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outfile << sep << (transitionRatio[ratioindex[i]] * ratioscale);
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outfile << "\n\tTransition step " << transitionStep << endl;
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}
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void Transition::storeTransitionStock(int area, AgeBandMatrix& Alkeys, const TimeClass* const TimeInfo) {
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int len, inarea = this->areaNum(area);
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for (len = Storage[inarea].minLength(age); len < Storage[inarea].maxLength(age); len++) {
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Storage[inarea][age][len].N = Alkeys[age][len].N;
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Storage[inarea][age][len].W = Alkeys[age][len].W;
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if (len >= minTransitionLength)
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Alkeys[age][len].setToZero();
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}
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}
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void Transition::storeTransitionStock(int area, AgeBandMatrix& Alkeys,
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AgeBandMatrixRatio& TagAlkeys, const TimeClass* const TimeInfo) {
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if (!istagged)
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handle.logMessage(LOGFAIL, "Error in transition - invalid tagging experiment");
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int len, tag;
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int inarea = this->areaNum(area);
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double tagnumber;
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for (len = Storage[inarea].minLength(age); len < Storage[inarea].maxLength(age); len++) {
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Storage[inarea][age][len].N = Alkeys[age][len].N;
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Storage[inarea][age][len].W = Alkeys[age][len].W;
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if (len >= minTransitionLength)
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Alkeys[age][len].setToZero();
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for (tag = 0; tag < TagAlkeys.numTagExperiments(); tag++) {
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tagnumber = *(TagAlkeys[age][len][tag].N);
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if (tagnumber < verysmall)
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*(tagStorage[inarea][age][len][tag].N) = 0.0;
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else
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*(tagStorage[inarea][age][len][tag].N) = tagnumber;
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if (len >= minTransitionLength) {
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*(TagAlkeys[age][len][tag].N) = 0.0;
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TagAlkeys[age][len][tag].R = 0.0;
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}
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}
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}
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}
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//area in the call to this routine is not in the local area numbering of the stock.
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void Transition::Move(int area, const TimeClass* const TimeInfo) {
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int i, inarea = this->areaNum(area);
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double ratio;
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for (i = 0; i < transitionStocks.Size(); i++) {
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if (!transitionStocks[i]->isInArea(area))
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handle.logMessage(LOGFAIL, "Error in transition - transition stock doesnt live on area", area);
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if (transitionStocks[i]->isBirthday(TimeInfo)) {
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Storage[inarea].IncrementAge();
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if (istagged && tagStorage.numTagExperiments() > 0)
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tagStorage[inarea].IncrementAge(Storage[inarea]);
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}
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ratio = transitionRatio[ratioindex[i]] * ratioscale;
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transitionStocks[i]->Add(Storage[inarea], CI[i], area, ratio);
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if (istagged && tagStorage.numTagExperiments() > 0)
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transitionStocks[i]->Add(tagStorage, CI[i], area, ratio);
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}
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Storage[inarea].setToZero();
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if (istagged && tagStorage.numTagExperiments() > 0)
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tagStorage[inarea].setToZero();
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}
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void Transition::Reset() {
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int i;
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//JMB check that the sum of the ratios is 1
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ratioscale = 0.0;
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for (i = 0; i < transitionRatio.Size(); i++ )
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ratioscale += transitionRatio[i];
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if (isZero(ratioscale)) {
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handle.logMessage(LOGWARN, "Warning in transition - specified ratios are zero");
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ratioscale = 1.0;
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} else if (isEqual(ratioscale, 1.0)) {
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// do nothing
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} else {
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handle.logMessage(LOGWARN, "Warning in transition - scaling ratios using", ratioscale);
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ratioscale = 1.0 / ratioscale;
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}
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if (handle.getLogLevel() >= LOGMESSAGE)
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handle.logMessage(LOGMESSAGE, "Reset transition data for stock", this->getName());
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}
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const StockPtrVector& Transition::getTransitionStocks() {
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return transitionStocks;
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}
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void Transition::setTagged() {
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istagged = 1;
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//resize tagStorage to be the same size as Storage
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int i;
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IntVector lower(2, 0);
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IntVector size(2, LgrpDiv->numLengthGroups());
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tagStorage.resize(areas.Size(), age, lower, size);
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for (i = 0; i < tagStorage.Size(); i++)
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tagStorage[i].setToZero();
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}
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void Transition::addTransitionTag(const char* tagname) {
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if (!istagged)
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handle.logMessage(LOGFAIL, "Error in transition - invalid tagging experiment", tagname);
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tagStorage.addTag(tagname);
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}
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void Transition::deleteTransitionTag(const char* tagname) {
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if (!istagged)
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handle.logMessage(LOGFAIL, "Error in transition - invalid tagging experiment", tagname);
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int minage, maxage, age, len, a;
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int id = tagStorage.getTagID(tagname);
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if (id >= 0) {
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minage = tagStorage[0].minAge();
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maxage = tagStorage[0].maxAge();
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//free memory allocated for tagging experiment
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for (a = 0; a < tagStorage.Size(); a++) {
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for (age = minage; age <= maxage; age++) {
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for (len = tagStorage[a].minLength(age); len < tagStorage[a].maxLength(age); len++) {
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delete[] (tagStorage[a][age][len][id].N);
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(tagStorage[a][age][len][id].N) = NULL;
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}
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}
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}
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tagStorage.deleteTag(tagname);
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} else
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handle.logMessage(LOGWARN, "Warning in transition - failed to delete tagging experiment", tagname);
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}
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int Transition::isTransitionStep(const TimeClass* const TimeInfo) {
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if (TimeInfo->getStep() == transitionStep)
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return 1;
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return 0;
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}
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