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#ifndef tags_h
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#define tags_h
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#include "keeper.h" |
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#include "hasname.h" |
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#include "commentstream.h" |
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#include "areatime.h" |
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#include "charptrvector.h" |
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#include "stockptrvector.h" |
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#include "agebandmatrix.h" |
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#include "agebandmatrixptrmatrix.h" |
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#include "livesonareas.h" |
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#include "doublematrixptrvector.h" |
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#include "conversionindexptrvector.h" |
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#include "formula.h" |
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class Tags : public HasName {
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public:
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Tags(CommentStream& infile, const char* givenname, const AreaClass* const Area,
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const TimeClass* const TimeInfo, Keeper* const keeper, StockPtrVector stockvec);
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~Tags();
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void Update(int timeid);
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void updateTags(int year, int step);
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void deleteStockTags();
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int getEndYear() const { return endyear; };
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int getNumTagTimeSteps() const { return numtagtimesteps; };
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CharPtrVector getStockNames() { return stocknames; };
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void setStock(StockPtrVector& Stocks);
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void updateMatureStock(const TimeClass* const TimeInfo);
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void updateTransitionStock(const TimeClass* const TimeInfo);
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void updateStrayStock(const TimeClass* const TimeInfo);
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void storeConsumptionALK(int area, const char* stockname);
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const AgeBandMatrix& getConsumptionALK(int area, const char* stockname);
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/**
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* \brief This function will print the model tagged population
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* \param outfile is the ofstream that all the model information gets sent to
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*/
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void Print(ofstream& outfile) const;
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/**
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* \brief This function will reset the model tagged population
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*/
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void Reset();
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int isWithinPeriod(int year, int step);
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int stockIndex(const char* stockname);
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int areaIndex(const char* stockname, int area);
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void addToTagStock(int timeid);
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private:
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void readNumbers(CommentStream& infile, const char* tagname, const TimeClass* const TimeInfo);
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CharPtrVector stocknames;
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//area-age-length distribution of tags by stocks
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AgeBandMatrixPtrMatrix AgeLengthStock;
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AgeBandMatrixPtrMatrix NumBeforeEating;
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Formula tagloss; //percentage of tags that are lost
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int tagarea; //area of tagging
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int tagyear; //year of tagging
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int tagstep; //step of tagging
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int endyear; //year of last recapture
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int numtagtimesteps;
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DoubleMatrixPtrVector NumberByLength;
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LengthGroupDivision* LgrpDiv;
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StockPtrVector tagStocks;
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StockPtrVector matureStocks;
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StockPtrVector transitionStocks;
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StockPtrVector strayStocks;
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ConversionIndexPtrVector CI;
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Stock* taggingstock;
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IntVector preyindex;
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IntVector updated;
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IntVector Years;
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IntVector Steps;
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};
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#endif
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