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agomez |
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#include "areatime.h" |
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#include "errorhandler.h" |
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#include "stockstdprinter.h" |
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#include "stockaggregator.h" |
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#include "stockpreyaggregator.h" |
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#include "charptrvector.h" |
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#include "stockptrvector.h" |
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#include "preyptrvector.h" |
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#include "stock.h" |
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#include "stockprey.h" |
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#include "conversionindex.h" |
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#include "readword.h" |
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#include "gadget.h" |
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#include "runid.h" |
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#include "global.h" |
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StockStdPrinter::StockStdPrinter(CommentStream& infile, const TimeClass* const TimeInfo)
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: Printer(STOCKSTDPRINTER), stockname(0), LgrpDiv(0), saggregator(0), paggregator(0), salptr(0), palptr(0) {
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char text[MaxStrLength];
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strncpy(text, "", MaxStrLength);
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filename = new char[MaxStrLength];
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strncpy(filename, "", MaxStrLength);
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isaprey = 0;
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stockname = new char[MaxStrLength];
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strncpy(stockname, "", MaxStrLength);
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readWordAndValue(infile, "stockname", stockname);
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infile >> text >> ws;
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if (strcasecmp(text, "scale") == 0) {
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infile >> scale >> ws >> text >> ws;
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if (scale < rathersmall) {
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handle.logFileMessage(LOGWARN, "scale should be a positive integer - set to default value 1");
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scale = 1.0;
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}
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} else
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scale = 1.0;
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//JMB - removed the need to read in the area aggregation file
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if (strcasecmp(text, "areaaggfile") == 0) {
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infile >> text >> ws;
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handle.logMessage(LOGWARN, "Warning in stockstdprinter - area aggregation file ignored");
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infile >> text >> ws;
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}
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//open the printfile
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if (strcasecmp(text, "printfile") != 0)
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handle.logFileUnexpected(LOGFAIL, "printfile", text);
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infile >> filename >> ws;
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outfile.open(filename, ios::out);
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handle.checkIfFailure(outfile, filename);
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infile >> text >> ws;
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if (strcasecmp(text, "precision") == 0) {
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infile >> precision >> ws >> text >> ws;
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width = precision + 4;
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} else {
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// use default values
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precision = largeprecision;
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width = largewidth;
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}
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if (precision < 0)
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handle.logFileMessage(LOGFAIL, "\nError in stockstdprinter - invalid value of precision");
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if (strcasecmp(text, "printatstart") == 0)
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infile >> printtimeid >> ws >> text >> ws;
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else
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printtimeid = 0;
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if (printtimeid != 0 && printtimeid != 1)
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handle.logFileMessage(LOGFAIL, "\nError in stockstdprinter - invalid value of printatstart");
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if (strcasecmp(text, "yearsandsteps") != 0)
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handle.logFileUnexpected(LOGFAIL, "yearsandsteps", text);
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if (!AAT.readFromFile(infile, TimeInfo))
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handle.logFileMessage(LOGFAIL, "\nError in stockstdprinter - wrong format for yearsandsteps");
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//prepare for next printfile component
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infile >> ws;
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if (!infile.eof()) {
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infile >> text >> ws;
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if (strcasecmp(text, "[component]") != 0)
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handle.logFileUnexpected(LOGFAIL, "[component]", text);
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}
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//finished initializing. Now print first lines
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outfile << "; ";
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RUNID.Print(outfile);
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outfile << "; Standard output file for the stock " << stockname;
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if (scale != 1.0) {
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outfile << "\n; Scaling factor for the number and number consumed is " << scale;
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//JMB - store this as 1/scale
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scale = 1.0 / scale;
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}
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if (printtimeid == 0)
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outfile << "\n; Printing the following information at the end of each timestep";
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else
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outfile << "\n; Printing the following information at the start of each timestep";
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outfile << "\n; year-step-area-age-number-mean length-mean weight-"
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<< "stddev length-number consumed-biomass consumed\n";
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outfile.flush();
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}
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StockStdPrinter::~StockStdPrinter() {
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outfile.close();
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outfile.clear();
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if (isaprey)
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delete paggregator;
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delete saggregator;
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delete LgrpDiv;
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delete[] stockname;
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}
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void StockStdPrinter::setStock(StockPtrVector& stockvec, const AreaClass* const Area) {
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StockPtrVector stocks;
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int i, maxage;
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for (i = 0; i < stockvec.Size(); i++)
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if (strcasecmp(stockvec[i]->getName(), stockname) == 0)
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stocks.resize(stockvec[i]);
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if (stocks.Size() != 1) {
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handle.logMessage(LOGWARN, "Error in stockstdprinter - failed to match stocks");
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for (i = 0; i < stocks.Size(); i++)
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handle.logMessage(LOGWARN, "Error in stockstdprinter - found stock", stocks[i]->getName());
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handle.logMessage(LOGFAIL, "Error in stockstdprinter - looking for stock", stockname);
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}
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IntVector areas = stocks[0]->getAreas();
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outerareas.resize(areas.Size(), 0);
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for (i = 0; i < outerareas.Size(); i++)
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outerareas[i] = Area->getModelArea(areas[i]);
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//prepare for the creation of the aggregator
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minage = stocks[0]->minAge();
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maxage = stocks[0]->maxAge();
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IntMatrix agematrix(maxage - minage + 1, 1, 0);
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for (i = 0; i < agematrix.Nrow(); i++)
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agematrix[i][0] = i + minage;
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IntMatrix areamatrix(areas.Size(), 1, 0);
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for (i = 0; i < areamatrix.Nrow(); i++)
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areamatrix[i][0] = areas[i];
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LgrpDiv = new LengthGroupDivision(*stocks[0]->getLengthGroupDiv());
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if (LgrpDiv->Error())
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handle.logMessage(LOGFAIL, "Error in stockstdprinter - failed to create length group");
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saggregator = new StockAggregator(stocks, LgrpDiv, areamatrix, agematrix);
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if (stocks[0]->isEaten()) {
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isaprey = 1;
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PreyPtrVector preys;
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preys.resize(stocks[0]->getPrey());
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//need to construct length group based on the min/max lengths of the stock
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double minl, maxl;
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minl = stocks[0]->getLengthGroupDiv()->minLength();
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maxl = stocks[0]->getLengthGroupDiv()->maxLength();
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LengthGroupDivision* tmpLgrpDiv = new LengthGroupDivision(minl, maxl, maxl - minl);
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if (LgrpDiv->Error())
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handle.logMessage(LOGFAIL, "Error in stockstdprinter - failed to create length group");
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paggregator = new StockPreyAggregator(preys, tmpLgrpDiv, areamatrix, agematrix);
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//JMB tmpLgrpDiv is no longer needed so delete it to free memory
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delete tmpLgrpDiv;
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}
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}
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void StockStdPrinter::Print(const TimeClass* const TimeInfo, int printtime) {
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if ((!AAT.atCurrentTime(TimeInfo)) || (printtime != printtimeid))
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return;
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saggregator->Sum();
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salptr = &saggregator->getSum();
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if (isaprey) {
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paggregator->Sum();
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palptr = &paggregator->getSum();
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}
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int a, age;
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for (a = 0; a < outerareas.Size(); a++) {
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for (age = (*salptr)[a].minAge(); age <= (*salptr)[a].maxAge(); age++) {
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outfile << setw(lowwidth) << TimeInfo->getYear() << sep
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<< setw(lowwidth) << TimeInfo->getStep() << sep
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<< setw(lowwidth) << outerareas[a] << sep << setw(lowwidth)
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<< age + minage << sep;
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ps.calcStatistics((*salptr)[a][age], LgrpDiv);
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//JMB crude filters to remove the 'silly' values from the output
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if (ps.totalNumber() < rathersmall) {
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outfile << setw(width) << 0 << sep << setw(printwidth) << 0
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<< sep << setw(printwidth) << 0 << sep << setw(printwidth) << 0
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<< sep << setw(width) << 0 << sep << setw(width) << 0 << endl;
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} else {
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outfile << setprecision(precision) << setw(width) << ps.totalNumber() * scale << sep
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<< setprecision(printprecision) << setw(printwidth) << ps.meanLength() << sep
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<< setprecision(printprecision) << setw(printwidth) << ps.meanWeight() << sep
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<< setprecision(printprecision) << setw(printwidth) << ps.sdevLength() << sep;
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if (isaprey) {
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//JMB crude filter to remove the 'silly' values from the output
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if (((*palptr)[a][age][0].N < rathersmall) || ((*palptr)[a][age][0].W < 0.0))
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outfile << setw(width) << 0 << sep << setw(width) << 0 << endl;
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else
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outfile << setprecision(precision) << setw(width) << (*palptr)[a][age][0].N
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<< sep << setprecision(precision) << setw(width)
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<< (*palptr)[a][age][0].W * (*palptr)[a][age][0].N << endl;
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} else
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outfile << setw(width) << 0 << sep << setw(width) << 0 << endl;
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}
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}
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}
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outfile.flush();
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}
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