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agomez |
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#include "stockpreyfullprinter.h" |
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#include "areatime.h" |
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#include "errorhandler.h" |
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#include "conversionindex.h" |
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#include "stockpreyaggregator.h" |
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#include "preyptrvector.h" |
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#include "stockprey.h" |
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#include "readword.h" |
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#include "gadget.h" |
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#include "runid.h" |
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#include "global.h" |
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StockPreyFullPrinter::StockPreyFullPrinter(CommentStream& infile, const TimeClass* const TimeInfo)
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: Printer(STOCKPREYFULLPRINTER), preyname(0), LgrpDiv(0) {
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char text[MaxStrLength];
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strncpy(text, "", MaxStrLength);
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preyname = new char[MaxStrLength];
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strncpy(preyname, "", MaxStrLength);
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//JMB - changed to read either preyname or stockname
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infile >> ws;
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char c = infile.peek();
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if ((c == 's') || (c == 'S'))
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readWordAndValue(infile, "stockname", preyname);
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else
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readWordAndValue(infile, "preyname", preyname);
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//JMB - removed the need to read in the area aggregation file
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infile >> text >> ws;
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if (strcasecmp(text, "areaaggfile") == 0) {
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infile >> text >> ws;
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handle.logMessage(LOGWARN, "Warning in stockpreyfullprinter - area aggregation file ignored");
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infile >> text >> ws;
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}
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//open the printfile
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filename = new char[MaxStrLength];
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strncpy(filename, "", MaxStrLength);
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//readWordAndValue(infile, "printfile", filename);
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if (strcasecmp(text, "printfile") != 0)
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handle.logFileUnexpected(LOGFAIL, "printfile", text);
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infile >> filename >> ws;
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outfile.open(filename, ios::out);
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handle.checkIfFailure(outfile, filename);
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infile >> text >> ws;
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if (strcasecmp(text, "precision") == 0) {
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infile >> precision >> ws >> text >> ws;
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width = precision + 4;
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} else {
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// use default values
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precision = printprecision;
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width = printwidth;
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}
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if (precision < 0)
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handle.logFileMessage(LOGFAIL, "\nError in stockpreyfullprinter - invalid value of precision");
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if (strcasecmp(text, "printatstart") == 0)
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infile >> printtimeid >> ws >> text >> ws;
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else
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printtimeid = 0;
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if (printtimeid != 0 && printtimeid != 1)
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handle.logFileMessage(LOGFAIL, "\nError in stockpreyfullprinter - invalid value of printatstart");
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if (strcasecmp(text, "yearsandsteps") != 0)
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handle.logFileUnexpected(LOGFAIL, "yearsandsteps", text);
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if (!AAT.readFromFile(infile, TimeInfo))
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handle.logFileMessage(LOGFAIL, "\nError in stockpreyfullprinter - wrong format for yearsandsteps");
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//prepare for next printfile component
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infile >> ws;
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if (!infile.eof()) {
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infile >> text >> ws;
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if (strcasecmp(text, "[component]") != 0)
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handle.logFileUnexpected(LOGFAIL, "[component]", text);
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}
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//finished initializing. Now print first line.
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outfile << "; ";
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RUNID.Print(outfile);
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outfile << "; Output file for the prey " << preyname;
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if (printtimeid == 0)
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outfile << "\n; Printing the following information at the end of each timestep";
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else
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outfile << "\n; Printing the following information at the start of each timestep";
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outfile << "\n; year-step-area-age-length-number consumed-biomass consumed\n";
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outfile.flush();
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}
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StockPreyFullPrinter::~StockPreyFullPrinter() {
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outfile.close();
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outfile.clear();
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delete LgrpDiv;
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delete aggregator;
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delete[] preyname;
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}
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void StockPreyFullPrinter::setPrey(PreyPtrVector& preyvec, const AreaClass* const Area) {
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PreyPtrVector preys;
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int i, maxage;
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for (i = 0; i < preyvec.Size(); i++)
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if (strcasecmp(preyvec[i]->getName(), preyname) == 0)
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preys.resize(preyvec[i]);
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if (preys.Size() != 1) {
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handle.logMessage(LOGWARN, "Error in stockpreyfullprinter - failed to match preys");
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for (i = 0; i < preys.Size(); i++)
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handle.logMessage(LOGWARN, "Error in stockpreyfullprinter - found prey", preys[i]->getName());
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handle.logMessage(LOGFAIL, "Error in stockpreyfullprinter - looking for prey", preyname);
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}
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//check that the prey is a stock and not otherfood
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if (preys[0]->getType() == LENGTHPREY)
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handle.logMessage(LOGFAIL, "Error in stockpreyfullprinter - cannot print prey", preys[i]->getName());
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//JMB need to construct a matrix of all the areas and ages for the prey
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IntVector areas = preys[0]->getAreas();
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IntMatrix areamatrix(areas.Size(), 1, 0);
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for (i = 0; i < areamatrix.Nrow(); i++)
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areamatrix[i][0] = areas[i];
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outerareas.resize(areas.Size(), 0);
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for (i = 0; i < outerareas.Size(); i++)
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outerareas[i] = Area->getModelArea(areas[i]);
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minage = ((StockPrey*)preys[0])->minAge();
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maxage = ((StockPrey*)preys[0])->maxAge();
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IntMatrix agematrix(maxage - minage + 1, 1, 0);
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for (i = 0; i < agematrix.Nrow(); i++)
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agematrix[i][0] = i + minage;
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LgrpDiv = new LengthGroupDivision(*preys[0]->getLengthGroupDiv());
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if (LgrpDiv->Error())
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handle.logMessage(LOGFAIL, "Error in stockpreyfullprinter - failed to create length group");
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aggregator = new StockPreyAggregator(preys, LgrpDiv, areamatrix, agematrix);
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}
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void StockPreyFullPrinter::Print(const TimeClass* const TimeInfo, int printtime) {
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if ((!AAT.atCurrentTime(TimeInfo)) || (printtime != printtimeid))
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return;
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aggregator->Sum();
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int a, age, len;
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alptr = &aggregator->getSum();
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for (a = 0; a < outerareas.Size(); a++) {
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for (age = (*alptr)[a].minAge(); age <= (*alptr)[a].maxAge(); age++) {
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for (len = (*alptr)[a].minLength(age); len < (*alptr)[a].maxLength(age); len++) {
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outfile << setw(lowwidth) << TimeInfo->getYear() << sep
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<< setw(lowwidth) << TimeInfo->getStep() << sep
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<< setw(lowwidth) << outerareas[a] << sep << setw(lowwidth)
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<< age + minage << sep << setw(lowwidth) << LgrpDiv->meanLength(len) << sep;
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//JMB crude filter to remove the 'silly' values from the output
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if (((*alptr)[a][age][len].N < rathersmall) || ((*alptr)[a][age][len].W < 0.0))
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outfile << setw(width) << 0 << sep << setw(width) << 0 << endl;
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else
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outfile << setprecision(precision) << setw(width) << (*alptr)[a][age][len].N << sep
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<< setprecision(precision) << setw(width) << (*alptr)[a][age][len].W * (*alptr)[a][age][len].N << endl;
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}
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}
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}
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outfile.flush();
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}
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