| 1 : |
agomez |
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#include "spawner.h" |
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#include "errorhandler.h" |
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#include "keeper.h" |
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#include "areatime.h" |
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#include "readfunc.h" |
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#include "mathfunc.h" |
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#include "readword.h" |
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#include "readaggregation.h" |
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#include "gadget.h" |
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#include "global.h" |
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SpawnData::SpawnData(CommentStream& infile, int maxage, const LengthGroupDivision* const lgrpdiv,
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const IntVector& Areas, const AreaClass* const Area, const char* givenname,
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const TimeClass* const TimeInfo, Keeper* const keeper) : HasName(givenname), LivesOnAreas(Areas) {
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keeper->addString("spawner");
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int i, tmpint = 0;
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ratioscale = 1.0; //JMB used to scale the ratios to ensure that they sum to 1
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char text[MaxStrLength];
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strncpy(text, "", MaxStrLength);
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ifstream datafile;
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CommentStream subdata(datafile);
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functionname = new char[MaxStrLength];
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strncpy(functionname, "", MaxStrLength);
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spawnLgrpDiv = 0;
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LgrpDiv = new LengthGroupDivision(*lgrpdiv);
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if (LgrpDiv->Error())
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handle.logMessage(LOGFAIL, "Error in spawner - failed to create length group");
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int numlength = LgrpDiv->numLengthGroups();
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spawnFirstYear = TimeInfo->getFirstYear();
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spawnLastYear = TimeInfo->getLastYear();
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spawnProportion.resize(numlength, 0.0);
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spawnMortality.resize(numlength, 0.0);
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spawnWeightLoss.resize(numlength, 0.0);
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infile >> text >> ws;
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if ((strcasecmp(text, "spawnstep") != 0) && (strcasecmp(text, "spawnsteps") != 0))
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handle.logFileUnexpected(LOGFAIL, "spawnsteps", text);
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while (isdigit(infile.peek()) && !infile.eof()) {
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infile >> tmpint >> ws;
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spawnStep.resize(1, tmpint);
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}
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for (i = 0; i < spawnStep.Size(); i++)
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if (spawnStep[i] < 1 || spawnStep[i] > TimeInfo->numSteps())
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handle.logFileMessage(LOGFAIL, "invalid spawning step", spawnStep[i]);
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infile >> text >> ws;
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if ((strcasecmp(text, "spawnarea") != 0) && (strcasecmp(text, "spawnareas") != 0))
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handle.logFileUnexpected(LOGFAIL, "spawnareas", text);
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while (isdigit(infile.peek()) && !infile.eof()) {
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infile >> tmpint >> ws;
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spawnArea.resize(1, tmpint);
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}
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for (i = 0; i < spawnArea.Size(); i++)
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spawnArea[i] = Area->getInnerArea(spawnArea[i]);
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infile >> text >> ws;
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//JMB check for optional firstspwanyear and lastspawnyear values
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if (strcasecmp(text, "firstspawnyear") == 0) {
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infile >> spawnFirstYear >> text >> ws;
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if (spawnFirstYear < TimeInfo->getFirstYear())
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handle.logFileMessage(LOGFAIL, "invalid first spawning year", spawnFirstYear);
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}
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if (strcasecmp(text, "lastspawnyear") == 0) {
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infile >> spawnLastYear >> text >> ws;
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if (spawnLastYear > TimeInfo->getLastYear())
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handle.logFileMessage(LOGFAIL, "invalid last spawning year", spawnLastYear);
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}
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if (strcasecmp(text, "spawnstocksandratios") == 0) {
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onlyParent = 0;
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i = 0;
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infile >> text >> ws;
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while (strcasecmp(text, "proportionfunction") != 0 && !infile.eof()) {
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spawnStockNames.resize(new char[strlen(text) + 1]);
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strcpy(spawnStockNames[i], text);
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spawnRatio.resize(1, keeper);
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if (!(infile >> spawnRatio[i]))
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handle.logFileMessage(LOGFAIL, "invalid format for spawn ratio");
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spawnRatio[i].Inform(keeper);
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infile >> text >> ws;
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i++;
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}
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} else if (strcasecmp(text, "onlyparent") == 0) {
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onlyParent = 1;
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infile >> text >> ws;
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} else
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handle.logFileUnexpected(LOGFAIL, "spawnstocksandratios or onlyparent", text);
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if (infile.eof())
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handle.logFileEOFMessage(LOGFAIL);
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if (strcasecmp(text, "proportionfunction") != 0)
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handle.logFileUnexpected(LOGFAIL, "proportionfunction", text);
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infile >> text >> ws;
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if (strcasecmp(text, "constant") == 0)
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fnProportion = new ConstSelectFunc();
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else if (strcasecmp(text, "straightline") == 0)
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fnProportion = new StraightSelectFunc();
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else if (strcasecmp(text, "exponential") == 0)
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fnProportion = new ExpSelectFunc();
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else
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handle.logFileMessage(LOGFAIL, "unrecognised proportion function", text);
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fnProportion->readConstants(infile, TimeInfo, keeper);
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readWordAndValue(infile, "mortalityfunction", text);
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if (strcasecmp(text, "constant") == 0)
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fnMortality = new ConstSelectFunc();
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else if (strcasecmp(text, "straightline") == 0)
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fnMortality = new StraightSelectFunc();
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else if (strcasecmp(text, "exponential") == 0)
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fnMortality = new ExpSelectFunc();
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else
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handle.logFileMessage(LOGFAIL, "unrecognised mortality function", text);
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fnMortality->readConstants(infile, TimeInfo, keeper);
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readWordAndValue(infile, "weightlossfunction", text);
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if (strcasecmp(text, "constant") == 0)
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fnWeightLoss = new ConstSelectFunc();
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else if (strcasecmp(text, "straightline") == 0)
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fnWeightLoss = new StraightSelectFunc();
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else if (strcasecmp(text, "exponential") == 0)
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fnWeightLoss = new ExpSelectFunc();
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else
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handle.logFileMessage(LOGFAIL, "unrecognised weight loss function", text);
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fnWeightLoss->readConstants(infile, TimeInfo, keeper);
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if (!onlyParent) {
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infile >> text >> ws;
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if (strcasecmp(text, "recruitment") != 0)
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handle.logFileUnexpected(LOGFAIL, "recruitment", text);
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//read in the recruitment function details
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functionnumber = 0;
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infile >> functionname >> ws;
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if (strcasecmp(functionname, "simplessb") == 0) {
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functionnumber = 1;
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spawnParameters.resize(1, keeper);
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} else if (strcasecmp(functionname, "ricker") == 0) {
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functionnumber = 2;
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spawnParameters.resize(2, keeper);
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} else if (strcasecmp(functionname, "bevertonholt") == 0) {
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functionnumber = 3;
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spawnParameters.resize(2, keeper);
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} else if (strcasecmp(functionname, "fecundity") == 0) {
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functionnumber = 4;
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spawnParameters.resize(5, keeper);
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} else if (strcasecmp(functionname, "baleen") == 0) {
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functionnumber = 5;
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spawnParameters.resize(4, keeper);
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} else if (strcasecmp(functionname, "hockeystick") == 0) {
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functionnumber = 6;
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spawnParameters.resize(2, keeper);
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} else
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handle.logFileMessage(LOGFAIL, "unrecognised recruitment function", functionname);
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spawnParameters.read(infile, TimeInfo, keeper);
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//read in the details about the new stock
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stockParameters.resize(4, keeper);
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infile >> text >> ws;
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if (strcasecmp(text, "stockparameters") != 0)
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handle.logFileUnexpected(LOGFAIL, "stockparameters", text);
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stockParameters.read(infile, TimeInfo, keeper);
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//resize spawnNumbers to store details of the spawning stock biomass
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for (i = 0; i < areas.Size(); i++)
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spawnNumbers.resize(new DoubleMatrix(maxage + 1, numlength, 0.0));
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}
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infile >> ws;
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if (!infile.eof()) {
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infile >> text >> ws;
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handle.logFileUnexpected(LOGFAIL, "<end of file>", text);
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}
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handle.logMessage(LOGMESSAGE, "Read spawning data file");
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keeper->clearLast();
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}
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SpawnData::~SpawnData() {
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int i;
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for (i = 0; i < spawnStockNames.Size(); i++)
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delete[] spawnStockNames[i];
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for (i = 0; i < spawnNumbers.Size(); i++)
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delete spawnNumbers[i];
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for (i = 0; i < CI.Size(); i++)
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delete CI[i];
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delete LgrpDiv;
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delete spawnLgrpDiv;
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delete fnProportion;
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delete fnMortality;
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delete fnWeightLoss;
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delete[] functionname;
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}
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void SpawnData::setStock(StockPtrVector& stockvec) {
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int i, j, index;
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if (onlyParent)
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return;
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for (i = 0; i < stockvec.Size(); i++)
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for (j = 0; j < spawnStockNames.Size(); j++)
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if (strcasecmp(stockvec[i]->getName(), spawnStockNames[j]) == 0)
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spawnStocks.resize(stockvec[i]);
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if (spawnStocks.Size() != spawnStockNames.Size()) {
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handle.logMessage(LOGWARN, "Error in spawner - failed to match spawning stocks");
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for (i = 0; i < stockvec.Size(); i++)
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handle.logMessage(LOGWARN, "Error in spawner - found stock", stockvec[i]->getName());
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for (i = 0; i < spawnStockNames.Size(); i++)
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handle.logMessage(LOGWARN, "Error in spawner - looking for stock", spawnStockNames[i]);
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handle.logMessage(LOGFAIL, ""); //JMB this will exit gadget
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}
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//JMB ensure that the ratio vector is indexed in the right order
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ratioindex.resize(spawnStocks.Size(), 0);
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for (i = 0; i < spawnStocks.Size(); i++)
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for (j = 0; j < spawnStockNames.Size(); j++)
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if (strcasecmp(spawnStocks[i]->getName(), spawnStockNames[j]) == 0)
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ratioindex[i] = j;
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//JMB check that the spawned stocks are defined on all the areas
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spawnAge = 9999;
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double minlength = 9999.0;
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double maxlength = 0.0;
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double dl = 9999.0;
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for (i = 0; i < spawnStocks.Size(); i++) {
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index = 0;
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| 238 : |
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for (j = 0; j < spawnArea.Size(); j++)
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if (!spawnStocks[i]->isInArea(spawnArea[j]))
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index++;
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| 241 : |
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if (index != 0)
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handle.logMessage(LOGWARN, "Warning in spawner - spawned stock isnt defined on all areas");
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| 244 : |
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spawnAge = min(spawnStocks[i]->minAge(), spawnAge);
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| 246 : |
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minlength = min(spawnStocks[i]->getLengthGroupDiv()->minLength(), minlength);
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| 247 : |
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maxlength = max(spawnStocks[i]->getLengthGroupDiv()->maxLength(), maxlength);
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| 248 : |
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dl = min(spawnStocks[i]->getLengthGroupDiv()->dl(), dl);
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| 249 : |
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}
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| 250 : |
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| 251 : |
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spawnLgrpDiv = new LengthGroupDivision(minlength, maxlength, dl);
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| 252 : |
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if (spawnLgrpDiv->Error())
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| 253 : |
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handle.logMessage(LOGFAIL, "Error in spawner - failed to create length group");
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| 254 : |
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for (i = 0; i < spawnStocks.Size(); i++) {
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| 255 : |
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CI.resize(new ConversionIndex(spawnLgrpDiv, spawnStocks[i]->getLengthGroupDiv()));
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| 256 : |
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if (CI[i]->Error())
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| 257 : |
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handle.logMessage(LOGFAIL, "Error in spawner - error when checking length structure");
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| 258 : |
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}
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| 259 : |
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| 260 : |
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IntVector minlv(1, 0);
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| 261 : |
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IntVector sizev(1, spawnLgrpDiv->numLengthGroups());
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| 262 : |
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Storage.resize(areas.Size(), spawnAge, minlv, sizev);
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| 263 : |
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for (i = 0; i < Storage.Size(); i++)
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| 264 : |
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Storage[i].setToZero();
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| 265 : |
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}
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| 266 : |
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| 267 : |
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void SpawnData::Spawn(AgeBandMatrix& Alkeys, int area, const TimeClass* const TimeInfo) {
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| 268 : |
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| 269 : |
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if (!onlyParent)
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| 270 : |
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spawnParameters.Update(TimeInfo);
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| 271 : |
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| 272 : |
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int age, len;
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| 273 : |
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int inarea = this->areaNum(area);
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| 274 : |
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PopInfo pop;
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| 275 : |
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for (age = Alkeys.minAge(); age <= Alkeys.maxAge(); age++) {
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| 276 : |
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//subtract mortality and reduce the weight of the living ones.
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| 277 : |
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for (len = Alkeys.minLength(age); len < Alkeys.maxLength(age); len++) {
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| 278 : |
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if (!isZero(spawnProportion[len])) {
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| 279 : |
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pop = Alkeys[age][len] * spawnProportion[len];
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| 280 : |
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| 281 : |
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//calculate the spawning stock biomass if needed
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| 282 : |
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if (!onlyParent)
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| 283 : |
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(*spawnNumbers[inarea])[age][len] = calcSpawnNumber(age, len, pop.N, pop.W);
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| 284 : |
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| 285 : |
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pop *= exp(-spawnMortality[len]);
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| 286 : |
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pop.W -= (spawnWeightLoss[len] * pop.W);
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| 287 : |
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Alkeys[age][len] *= (1.0 - spawnProportion[len]);
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| 288 : |
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Alkeys[age][len] += pop;
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| 289 : |
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}
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| 290 : |
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}
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| 291 : |
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}
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| 292 : |
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}
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| 293 : |
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| 294 : |
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void SpawnData::addSpawnStock(int area, const TimeClass* const TimeInfo) {
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| 295 : |
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| 296 : |
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if (onlyParent)
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| 297 : |
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return;
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| 298 : |
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| 299 : |
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int s, age, len;
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| 300 : |
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int inarea = this->areaNum(area);
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| 301 : |
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double tmp, length, N, total, sum;
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| 302 : |
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| 303 : |
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//create a length distribution and mean weight for the new stock
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| 304 : |
|
|
stockParameters.Update(TimeInfo);
|
| 305 : |
|
|
if (handle.getLogLevel() >= LOGWARN) {
|
| 306 : |
|
|
if (isZero(stockParameters[1]))
|
| 307 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - invalid standard deviation for spawned stock", this->getName());
|
| 308 : |
|
|
if (stockParameters[0] < spawnLgrpDiv->minLength())
|
| 309 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - mean length is less than minimum length for stock", this->getName());
|
| 310 : |
|
|
if (stockParameters[0] > spawnLgrpDiv->maxLength())
|
| 311 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - mean length is greater than maximum length for stock", this->getName());
|
| 312 : |
|
|
}
|
| 313 : |
|
|
|
| 314 : |
|
|
sum = 0.0;
|
| 315 : |
|
|
Storage[inarea].setToZero();
|
| 316 : |
|
|
if (stockParameters[1] > verysmall) {
|
| 317 : |
|
|
tmp = 1.0 / (2 * stockParameters[1] * stockParameters[1]);
|
| 318 : |
|
|
for (len = 0; len < spawnLgrpDiv->numLengthGroups(); len++) {
|
| 319 : |
|
|
length = spawnLgrpDiv->meanLength(len) - stockParameters[0];
|
| 320 : |
|
|
N = exp(-(length * length * tmp));
|
| 321 : |
|
|
Storage[inarea][spawnAge][len].N = N;
|
| 322 : |
|
|
sum += N;
|
| 323 : |
|
|
}
|
| 324 : |
|
|
}
|
| 325 : |
|
|
|
| 326 : |
|
|
//calculate the total number of recruits and distribute this through the length groups
|
| 327 : |
|
|
if (!isZero(sum)) {
|
| 328 : |
|
|
tmp = 0.0; //JMB dummy temperature of zero
|
| 329 : |
|
|
total = calcRecruitNumber(tmp, inarea) / sum;
|
| 330 : |
|
|
for (len = 0; len < spawnLgrpDiv->numLengthGroups(); len++) {
|
| 331 : |
|
|
length = spawnLgrpDiv->meanLength(len);
|
| 332 : |
|
|
Storage[inarea][spawnAge][len].N *= total;
|
| 333 : |
|
|
Storage[inarea][spawnAge][len].W = stockParameters[2] * pow(length, stockParameters[3]);
|
| 334 : |
|
|
}
|
| 335 : |
|
|
|
| 336 : |
|
|
//add this to the spawned stocks
|
| 337 : |
|
|
for (s = 0; s < spawnStocks.Size(); s++) {
|
| 338 : |
|
|
if (!spawnStocks[s]->isInArea(area))
|
| 339 : |
|
|
handle.logMessage(LOGFAIL, "Error in spawner - spawned stock doesnt live on area", area);
|
| 340 : |
|
|
|
| 341 : |
|
|
tmp = spawnRatio[ratioindex[s]] * ratioscale;
|
| 342 : |
|
|
spawnStocks[s]->Add(Storage[inarea], CI[s], area, tmp);
|
| 343 : |
|
|
}
|
| 344 : |
|
|
}
|
| 345 : |
|
|
}
|
| 346 : |
|
|
|
| 347 : |
|
|
int SpawnData::isSpawnStepArea(int area, const TimeClass* const TimeInfo) {
|
| 348 : |
|
|
int i, j;
|
| 349 : |
|
|
|
| 350 : |
|
|
if ((TimeInfo->getYear() < spawnFirstYear) || (TimeInfo->getYear() > spawnLastYear))
|
| 351 : |
|
|
return 0;
|
| 352 : |
|
|
|
| 353 : |
|
|
for (i = 0; i < spawnStep.Size(); i++)
|
| 354 : |
|
|
for (j = 0; j < spawnArea.Size(); j++)
|
| 355 : |
|
|
if ((spawnStep[i] == TimeInfo->getStep()) && (spawnArea[j] == area))
|
| 356 : |
|
|
return 1;
|
| 357 : |
|
|
return 0;
|
| 358 : |
|
|
}
|
| 359 : |
|
|
|
| 360 : |
|
|
void SpawnData::Reset(const TimeClass* const TimeInfo) {
|
| 361 : |
|
|
int i;
|
| 362 : |
|
|
|
| 363 : |
|
|
fnProportion->updateConstants(TimeInfo);
|
| 364 : |
|
|
if (fnProportion->didChange(TimeInfo)) {
|
| 365 : |
|
|
for (i = 0; i < LgrpDiv->numLengthGroups(); i++) {
|
| 366 : |
|
|
spawnProportion[i] = fnProportion->calculate(LgrpDiv->meanLength(i));
|
| 367 : |
|
|
if (spawnProportion[i] < 0.0) {
|
| 368 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - function outside bounds", spawnProportion[i]);
|
| 369 : |
|
|
spawnProportion[i] = 0.0;
|
| 370 : |
|
|
}
|
| 371 : |
|
|
if (spawnProportion[i] > 1.0) {
|
| 372 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - function outside bounds", spawnProportion[i]);
|
| 373 : |
|
|
spawnProportion[i] = 1.0;
|
| 374 : |
|
|
}
|
| 375 : |
|
|
}
|
| 376 : |
|
|
}
|
| 377 : |
|
|
|
| 378 : |
|
|
fnWeightLoss->updateConstants(TimeInfo);
|
| 379 : |
|
|
if (fnWeightLoss->didChange(TimeInfo)) {
|
| 380 : |
|
|
for (i = 0; i < LgrpDiv->numLengthGroups(); i++) {
|
| 381 : |
|
|
spawnWeightLoss[i] = fnWeightLoss->calculate(LgrpDiv->meanLength(i));
|
| 382 : |
|
|
if (spawnWeightLoss[i] < 0.0) {
|
| 383 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - function outside bounds", spawnWeightLoss[i]);
|
| 384 : |
|
|
spawnWeightLoss[i] = 0.0;
|
| 385 : |
|
|
}
|
| 386 : |
|
|
if (spawnWeightLoss[i] > 1.0) {
|
| 387 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - function outside bounds", spawnWeightLoss[i]);
|
| 388 : |
|
|
spawnWeightLoss[i] = 1.0;
|
| 389 : |
|
|
}
|
| 390 : |
|
|
}
|
| 391 : |
|
|
}
|
| 392 : |
|
|
|
| 393 : |
|
|
fnMortality->updateConstants(TimeInfo);
|
| 394 : |
|
|
if (fnMortality->didChange(TimeInfo)) {
|
| 395 : |
|
|
for (i = 0; i < LgrpDiv->numLengthGroups(); i++) {
|
| 396 : |
|
|
spawnMortality[i] = fnMortality->calculate(LgrpDiv->meanLength(i));
|
| 397 : |
|
|
}
|
| 398 : |
|
|
}
|
| 399 : |
|
|
|
| 400 : |
|
|
//JMB check that the sum of the ratios is 1
|
| 401 : |
|
|
if ((!onlyParent) && (TimeInfo->getTime() == 1)) {
|
| 402 : |
|
|
ratioscale = 0.0;
|
| 403 : |
|
|
for (i = 0; i < spawnRatio.Size(); i++ )
|
| 404 : |
|
|
ratioscale += spawnRatio[i];
|
| 405 : |
|
|
|
| 406 : |
|
|
if (isZero(ratioscale)) {
|
| 407 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - specified ratios are zero");
|
| 408 : |
|
|
ratioscale = 1.0;
|
| 409 : |
|
|
} else if (isEqual(ratioscale, 1.0)) {
|
| 410 : |
|
|
// do nothing
|
| 411 : |
|
|
} else {
|
| 412 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - scaling ratios using", ratioscale);
|
| 413 : |
|
|
ratioscale = 1.0 / ratioscale;
|
| 414 : |
|
|
}
|
| 415 : |
|
|
}
|
| 416 : |
|
|
|
| 417 : |
|
|
if (handle.getLogLevel() >= LOGMESSAGE)
|
| 418 : |
|
|
handle.logMessage(LOGMESSAGE, "Reset spawning data for stock", this->getName());
|
| 419 : |
|
|
}
|
| 420 : |
|
|
|
| 421 : |
|
|
double SpawnData::calcSpawnNumber(int age, int len, double number, double weight) {
|
| 422 : |
|
|
double temp = 0.0;
|
| 423 : |
|
|
|
| 424 : |
|
|
switch (functionnumber) {
|
| 425 : |
ulcessvp |
2 |
case 1:
|
| 426 : |
|
|
case 2:
|
| 427 : |
|
|
case 3:
|
| 428 : |
|
|
temp = number * weight;
|
| 429 : |
|
|
break;
|
| 430 : |
agomez |
1 |
case 4:
|
| 431 : |
|
|
temp = pow(LgrpDiv->meanLength(len), spawnParameters[1]) * pow(age, spawnParameters[2])
|
| 432 : |
|
|
* pow(number, spawnParameters[3]) * pow(weight, spawnParameters[4]);
|
| 433 : |
|
|
break;
|
| 434 : |
|
|
case 5:
|
| 435 : |
|
|
temp = number;
|
| 436 : |
|
|
break;
|
| 437 : |
|
|
default:
|
| 438 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - unrecognised recruitment function", functionname);
|
| 439 : |
|
|
break;
|
| 440 : |
|
|
}
|
| 441 : |
|
|
|
| 442 : |
|
|
return temp;
|
| 443 : |
|
|
}
|
| 444 : |
|
|
|
| 445 : |
|
|
double SpawnData::calcRecruitNumber(double temp, int inarea) {
|
| 446 : |
|
|
int age, len;
|
| 447 : |
|
|
double total = 0.0, ssb = 0.0;
|
| 448 : |
|
|
|
| 449 : |
|
|
for (age = 0; age < (*spawnNumbers[inarea]).Nrow(); age++)
|
| 450 : |
|
|
for (len = 0; len < (*spawnNumbers[inarea]).Ncol(age); len++)
|
| 451 : |
|
|
ssb += (*spawnNumbers[inarea])[age][len];
|
| 452 : |
|
|
|
| 453 : |
|
|
switch (functionnumber) {
|
| 454 : |
|
|
case 1:
|
| 455 : |
|
|
case 4:
|
| 456 : |
|
|
total = ssb * spawnParameters[0];
|
| 457 : |
|
|
break;
|
| 458 : |
|
|
case 2:
|
| 459 : |
|
|
total = ssb * spawnParameters[0] * exp(-spawnParameters[1] * ssb);
|
| 460 : |
|
|
break;
|
| 461 : |
|
|
case 3:
|
| 462 : |
|
|
total = ssb * spawnParameters[0] / (spawnParameters[1] + ssb);
|
| 463 : |
|
|
break;
|
| 464 : |
|
|
case 5:
|
| 465 : |
|
|
total = ssb * spawnParameters[0] *
|
| 466 : |
|
|
max(1 + spawnParameters[1] * (1- pow(ssb / spawnParameters[2],double(spawnParameters[3]))),0.0);
|
| 467 : |
|
|
break;
|
| 468 : |
|
|
default:
|
| 469 : |
|
|
handle.logMessage(LOGWARN, "Warning in spawner - unrecognised recruitment function", functionname);
|
| 470 : |
|
|
break;
|
| 471 : |
|
|
}
|
| 472 : |
|
|
|
| 473 : |
|
|
return total;
|
| 474 : |
|
|
}
|
| 475 : |
|
|
|
| 476 : |
|
|
void SpawnData::Print(ofstream& outfile) const {
|
| 477 : |
|
|
|
| 478 : |
|
|
if (onlyParent) {
|
| 479 : |
|
|
outfile << "\nSpawning data\n\t** Only modelling the affect on the parent stock **"
|
| 480 : |
|
|
<< "\n\t** No recruits are created during the spawning process **\n";
|
| 481 : |
|
|
return;
|
| 482 : |
|
|
}
|
| 483 : |
|
|
|
| 484 : |
|
|
int i;
|
| 485 : |
|
|
outfile << "\nSpawning data\n\tNames of spawned stocks:";
|
| 486 : |
|
|
for (i = 0; i < spawnStockNames.Size(); i++)
|
| 487 : |
|
|
outfile << sep << spawnStockNames[i];
|
| 488 : |
|
|
outfile << "\n\tRatio spawning into each stock:";
|
| 489 : |
|
|
for (i = 0; i < spawnRatio.Size(); i++)
|
| 490 : |
|
|
outfile << sep << (spawnRatio[ratioindex[i]] * ratioscale);
|
| 491 : |
|
|
outfile << "\n\t";
|
| 492 : |
|
|
spawnLgrpDiv->Print(outfile);
|
| 493 : |
|
|
outfile << "\tStored numbers:\n";
|
| 494 : |
|
|
for (i = 0; i < areas.Size(); i++) {
|
| 495 : |
|
|
outfile << "\tInternal area " << areas[i] << "\n\tNumbers\n";
|
| 496 : |
|
|
Storage[i].printNumbers(outfile);
|
| 497 : |
|
|
outfile << "\tMean weights\n";
|
| 498 : |
|
|
Storage[i].printWeights(outfile);
|
| 499 : |
|
|
}
|
| 500 : |
|
|
}
|
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