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#ifndef sibylengthonstep_h
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#define sibylengthonstep_h
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#include "sionstep.h" |
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/**
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* \class SIByLengthOnStep
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* \brief This is the class used to calculate a likelihood score by fitting the model population to length based survey index data
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*/
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class SIByLengthOnStep : public SIOnStep {
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public:
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/**
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* \brief This is the SIByLengthOnStep constructor
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* \param infile is the CommentStream to read the survey index data from
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* \param areas is the IntMatrix of areas that the survey index can take place on
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* \param lengths is the DoubleVector of lengths from the survey index data
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* \param areaindex is the CharPtrVector of area identifier text strings
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* \param lenindex is the CharPtrVector of length identifier text strings
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* \param TimeInfo is the TimeClass for the current model
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* \param datafilename is the name of the file containing the survey index data
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* \param givenname is the name of the SIByLengthOnStep likelihood component
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* \param bio is the flag to denote whether the index should be based on the biomass or not
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*/
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SIByLengthOnStep(CommentStream& infile, const IntMatrix& areas,
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const DoubleVector& lengths, const CharPtrVector& areaindex,
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const CharPtrVector& lenindex, const TimeClass* const TimeInfo,
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const char* datafilename, const char* givenname, int bio);
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/**
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* \brief This is the default SIByLengthOnStep destructor
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*/
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virtual ~SIByLengthOnStep();
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/**
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* \brief This function will sum the survey index by length data
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* \param TimeInfo is the TimeClass for the current model
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*/
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virtual void Sum(const TimeClass* const TimeInfo);
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/**
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* \brief This will select the fleets and stocks required to calculate the survey index likelihood score
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* \param Fleets is the FleetPtrVector of all the available fleets
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* \param Stocks is the StockPtrVector of all the available stocks
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*/
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virtual void setFleetsAndStocks(FleetPtrVector& Fleets, StockPtrVector& Stocks);
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/**
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* \brief This function will print the SIByLengthOnStep information
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* \param outfile is the ofstream that all the model information gets sent to
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*/
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virtual void Print(ofstream& outfile) const { aggregator->Print(outfile); };
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protected:
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/**
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* \brief This is the StockAggregator used to collect information about the relevant stocks for the survey index data
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*/
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StockAggregator* aggregator;
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};
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#endif
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