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agomez |
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#include "sibyacousticonstep.h" |
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#include "stock.h" |
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#include "areatime.h" |
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#include "mathfunc.h" |
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#include "errorhandler.h" |
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#include "gadget.h" |
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#include "global.h" |
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SIByAcousticOnStep::SIByAcousticOnStep(CommentStream& infile, const IntMatrix& areas,
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const CharPtrVector& areaindex, const CharPtrVector& fleetindex,
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const TimeClass* const TimeInfo, const char* datafilename, const char* givenname, int bio)
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: SIOnStep(infile, datafilename, areaindex, TimeInfo, areas, fleetindex, givenname, bio, SIACOUSTIC) {
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}
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SIByAcousticOnStep::~SIByAcousticOnStep() {
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if (aggregator != 0)
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delete aggregator;
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}
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void SIByAcousticOnStep::setFleetsAndStocks(FleetPtrVector& Fleets, StockPtrVector& Stocks) {
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int i, minage, maxage;
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double minlength, maxlength;
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if (Stocks.Size() == 0)
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handle.logMessage(LOGFAIL, "Error in surveyindex - failed to initialise stock data");
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minage = Stocks[0]->minAge();
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maxage = Stocks[0]->maxAge();
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minlength = Stocks[0]->getLengthGroupDiv()->minLength();
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maxlength = Stocks[0]->getLengthGroupDiv()->maxLength();
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if (Stocks.Size() > 1) {
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for (i = 1; i < Stocks.Size(); i++) {
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minlength = min(Stocks[i]->getLengthGroupDiv()->minLength(), minlength);
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maxlength = max(Stocks[i]->getLengthGroupDiv()->maxLength(), maxlength);
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minage = min(Stocks[i]->minAge(), minage);
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maxage = max(Stocks[i]->maxAge(), maxage);
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}
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}
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LgrpDiv = new LengthGroupDivision(minlength, maxlength, maxlength - minlength);
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if (LgrpDiv->Error())
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handle.logMessage(LOGFAIL, "Error in surveyindex - failed to create length group");
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Ages.AddRows(1, maxage - minage + 1, 0);
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for (i = 0; i < Ages.Ncol(); i++)
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Ages[0][i] = i + minage;
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aggregator = new StockAggregator(Stocks, LgrpDiv, Areas, Ages);
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}
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void SIByAcousticOnStep::Sum(const TimeClass* const TimeInfo) {
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if (!AAT.atCurrentTime(TimeInfo))
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return;
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int a;
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timeindex = -1;
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for (a = 0; a < Years.Size(); a++)
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if ((Years[a] == TimeInfo->getYear()) && (Steps[a] == TimeInfo->getStep()))
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timeindex = a;
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if (timeindex == -1)
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handle.logMessage(LOGFAIL, "Error in surveyindex - invalid timestep");
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if (handle.getLogLevel() >= LOGMESSAGE)
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handle.logMessage(LOGMESSAGE, "Calculating index for surveyindex component", this->getName());
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aggregator->Sum();
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alptr = &aggregator->getSum();
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//alptr will only have one length group and one age group
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for (a = 0; a < Areas.Nrow(); a++)
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(*modelIndex[timeindex])[a][0] = (*alptr)[a][0][0].N;
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if (biomass)
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for (a = 0; a < Areas.Nrow(); a++)
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(*modelIndex[timeindex])[a][0] *= (*alptr)[a][0][0].W;
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}
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