| 1 : |
agomez |
1 |
#ifndef recaggregator_h
|
| 2 : |
|
|
#define recaggregator_h
|
| 3 : |
|
|
|
| 4 : |
|
|
#include "areatime.h" |
| 5 : |
|
|
#include "agebandmatrixptrvector.h" |
| 6 : |
|
|
#include "conversionindexptrvector.h" |
| 7 : |
|
|
#include "fleetptrvector.h" |
| 8 : |
|
|
#include "stockptrvector.h" |
| 9 : |
|
|
#include "predatorptrvector.h" |
| 10 : |
|
|
#include "preyptrvector.h" |
| 11 : |
|
|
#include "intmatrix.h" |
| 12 : |
|
|
#include "tags.h" |
| 13 : |
|
|
|
| 14 : |
|
|
/**
|
| 15 : |
|
|
* \class RecAggregator
|
| 16 : |
|
|
* \brief This is the class used to aggregate the recaptured tagged stock information
|
| 17 : |
|
|
*/
|
| 18 : |
|
|
class RecAggregator {
|
| 19 : |
|
|
public:
|
| 20 : |
|
|
/**
|
| 21 : |
|
|
* \brief This is the RecAggregator constructor
|
| 22 : |
|
|
* \param Stocks is the StockPtrVector of the stocks that will be recaptured
|
| 23 : |
|
|
* \param Fleets is the FleetPtrVector of the fleets that will be recapturing the tagged fish
|
| 24 : |
|
|
* \param Lgrpdiv is the LengthGroupDivision of the recaptured fish
|
| 25 : |
|
|
* \param Areas is the IntMatrix of areas that the recaptures can take place on
|
| 26 : |
|
|
* \param Ages is the IntMatrix of ages of the recaptures
|
| 27 : |
|
|
* \param tag is the Tags of the tagging experiments
|
| 28 : |
|
|
*/
|
| 29 : |
|
|
RecAggregator(const FleetPtrVector& Fleets, const StockPtrVector& Stocks,
|
| 30 : |
|
|
LengthGroupDivision* const Lgrpdiv, const IntMatrix& Areas,
|
| 31 : |
|
|
const IntMatrix& Ages, Tags* tag);
|
| 32 : |
|
|
/**
|
| 33 : |
|
|
* \brief This is the default RecAggregator destructor
|
| 34 : |
|
|
*/
|
| 35 : |
|
|
~RecAggregator();
|
| 36 : |
|
|
/**
|
| 37 : |
|
|
* \brief This function will return the LengthGroupDivision of the aggregator
|
| 38 : |
|
|
* \return LgrpDiv, the LengthGroupDivision of the aggregator
|
| 39 : |
|
|
*/
|
| 40 : |
|
|
LengthGroupDivision* getLengthGroupDiv() const { return LgrpDiv; };
|
| 41 : |
|
|
/**
|
| 42 : |
|
|
* \brief This function will reset the recapture data
|
| 43 : |
|
|
*/
|
| 44 : |
|
|
void Reset();
|
| 45 : |
|
|
/**
|
| 46 : |
|
|
* \brief This function will aggregate the recapture data
|
| 47 : |
|
|
*/
|
| 48 : |
|
|
void Sum();
|
| 49 : |
|
|
/**
|
| 50 : |
|
|
* \brief This will print the aggregator information to the ofstream specified
|
| 51 : |
|
|
* \param outfile is the ofstream to the file that the aggregator information gets sent to
|
| 52 : |
|
|
*/
|
| 53 : |
|
|
void Print(ofstream &outfile) const;
|
| 54 : |
|
|
/**
|
| 55 : |
|
|
* \brief This will return the AgeBandMatrixPtrVector containing the aggregated recaptures information
|
| 56 : |
|
|
* \return total, the AgeBandMatrixPtrVector of aggregated recaptures information
|
| 57 : |
|
|
*/
|
| 58 : |
|
|
const AgeBandMatrixPtrVector& getSum() const { return total; };
|
| 59 : |
|
|
private:
|
| 60 : |
|
|
/**
|
| 61 : |
|
|
* \brief This is the PredatorPtrVector of the fleets that will be aggregated
|
| 62 : |
|
|
*/
|
| 63 : |
|
|
PredatorPtrVector predators;
|
| 64 : |
|
|
/**
|
| 65 : |
|
|
* \brief This is the PreyPtrVector of the stocks that will be aggregated
|
| 66 : |
|
|
*/
|
| 67 : |
|
|
PreyPtrVector preys;
|
| 68 : |
|
|
/**
|
| 69 : |
|
|
* \brief This is the Tags containing details of the tagging experiment that will be aggregated
|
| 70 : |
|
|
*/
|
| 71 : |
|
|
Tags* taggingExp;
|
| 72 : |
|
|
/**
|
| 73 : |
|
|
* \brief This is the LengthGroupDivision of the aggregated stocks
|
| 74 : |
|
|
*/
|
| 75 : |
|
|
LengthGroupDivision* LgrpDiv;
|
| 76 : |
|
|
/**
|
| 77 : |
|
|
* \brief This is the IntMatrix used to store area information
|
| 78 : |
|
|
*/
|
| 79 : |
|
|
IntMatrix areas;
|
| 80 : |
|
|
/**
|
| 81 : |
|
|
* \brief This is the IntMatrix used to store age information
|
| 82 : |
|
|
*/
|
| 83 : |
|
|
IntMatrix ages;
|
| 84 : |
|
|
/**
|
| 85 : |
|
|
* \brief This is the IntMatrix used to store predation information
|
| 86 : |
|
|
* \note doescatch[i][j] is the flag to denote whether fleet i catches stock j
|
| 87 : |
|
|
*/
|
| 88 : |
|
|
IntMatrix doescatch;
|
| 89 : |
|
|
/**
|
| 90 : |
|
|
* \brief This is the ConversionIndexPtrVector used to convert the length groups of the stocks to be aggregated
|
| 91 : |
|
|
*/
|
| 92 : |
|
|
ConversionIndexPtrVector CI;
|
| 93 : |
|
|
/**
|
| 94 : |
|
|
* \brief This is the AgeBandMatrixPtrVector used to store the aggregated recaptures
|
| 95 : |
|
|
*/
|
| 96 : |
|
|
AgeBandMatrixPtrVector total;
|
| 97 : |
|
|
/**
|
| 98 : |
|
|
* \brief This is the DoubleVector used to temporarily store suitability information when aggregating the catch
|
| 99 : |
|
|
*/
|
| 100 : |
|
|
const DoubleVector* suitptr;
|
| 101 : |
|
|
/**
|
| 102 : |
|
|
* \brief This is the AgeBandMatrix used to temporarily store information when aggregating the catch
|
| 103 : |
|
|
*/
|
| 104 : |
|
|
const AgeBandMatrix* alptr;
|
| 105 : |
|
|
};
|
| 106 : |
|
|
|
| 107 : |
|
|
#endif
|
Parent Directory
Revision Log