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agomez |
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#include "predatorprinter.h" |
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#include "conversionindex.h" |
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#include "predatoraggregator.h" |
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#include "areatime.h" |
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#include "readfunc.h" |
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#include "readword.h" |
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#include "readaggregation.h" |
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#include "errorhandler.h" |
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#include "predator.h" |
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#include "prey.h" |
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#include "gadget.h" |
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#include "runid.h" |
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#include "global.h" |
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PredatorPrinter::PredatorPrinter(CommentStream& infile, const TimeClass* const TimeInfo)
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: Printer(PREDATORPRINTER), predLgrpDiv(0), preyLgrpDiv(0), aggregator(0), dptr(0) {
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char text[MaxStrLength];
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strncpy(text, "", MaxStrLength);
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int i, j;
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//default value is to print biomass
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biomass = 1;
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//read in the predator names
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i = 0;
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infile >> text >> ws;
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if ((strcasecmp(text, "predators") != 0) && (strcasecmp(text, "predatornames") != 0))
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handle.logFileUnexpected(LOGFAIL, "predatornames", text);
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infile >> text >> ws;
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while (!infile.eof() && ((strcasecmp(text, "preys") != 0) && (strcasecmp(text, "preynames") != 0))) {
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predatornames.resize(new char[strlen(text) + 1]);
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strcpy(predatornames[i++], text);
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infile >> text >> ws;
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}
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if (predatornames.Size() == 0)
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handle.logFileMessage(LOGFAIL, "\nError in predatorprinter - failed to read predators");
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handle.logMessage(LOGMESSAGE, "Read predator data - number of predators", predatornames.Size());
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//read in the prey names
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i = 0;
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infile >> text >> ws;
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while (!infile.eof() && (strcasecmp(text, "areaaggfile") != 0)) {
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preynames.resize(new char[strlen(text) + 1]);
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strcpy(preynames[i++], text);
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infile >> text >> ws;
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}
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if (preynames.Size() == 0)
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handle.logFileMessage(LOGFAIL, "\nError in predatorprinter - failed to read preys");
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handle.logMessage(LOGMESSAGE, "Read prey data - number of preys", preynames.Size());
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//read in area aggregation from file
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filename = new char[MaxStrLength];
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strncpy(filename, "", MaxStrLength);
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ifstream datafile;
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CommentStream subdata(datafile);
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infile >> filename >> ws;
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datafile.open(filename, ios::in);
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handle.checkIfFailure(datafile, filename);
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handle.Open(filename);
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i = readAggregation(subdata, areas, areaindex);
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handle.Close();
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datafile.close();
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datafile.clear();
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//read in predator length aggregation from file
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DoubleVector predlengths;
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readWordAndValue(infile, "predlenaggfile", filename);
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datafile.open(filename, ios::in);
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handle.checkIfFailure(datafile, filename);
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handle.Open(filename);
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i = readLengthAggregation(subdata, predlengths, predlenindex);
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handle.Close();
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datafile.close();
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datafile.clear();
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//read in prey length aggregation from file
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DoubleVector preylengths;
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readWordAndValue(infile, "preylenaggfile", filename);
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datafile.open(filename, ios::in);
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handle.checkIfFailure(datafile, filename);
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handle.Open(filename);
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i = readLengthAggregation(subdata, preylengths, preylenindex);
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handle.Close();
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datafile.close();
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datafile.clear();
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//finished reading from infile
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predLgrpDiv = new LengthGroupDivision(predlengths);
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if (predLgrpDiv->Error())
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handle.logFileMessage(LOGFAIL, "\nError in predatorprinter - failed to create predator length group");
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preyLgrpDiv = new LengthGroupDivision(preylengths);
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if (preyLgrpDiv->Error())
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handle.logFileMessage(LOGFAIL, "\nError in predatorprinter - failed to create prey length group");
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char c = infile.peek();
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if ((c == 'b') || (c == 'B'))
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readWordAndVariable(infile, "biomass", biomass);
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if (biomass != 0 && biomass != 1)
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handle.logFileMessage(LOGFAIL, "\nError in predatorprinter - biomass must be 0 or 1");
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//open the printfile
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readWordAndValue(infile, "printfile", filename);
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outfile.open(filename, ios::out);
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handle.checkIfFailure(outfile, filename);
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infile >> text >> ws;
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if (strcasecmp(text, "precision") == 0) {
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infile >> precision >> ws >> text >> ws;
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width = precision + 4;
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} else {
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//use default values
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precision = largeprecision;
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width = largewidth;
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}
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if (precision < 0)
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handle.logFileMessage(LOGFAIL, "\nError in predatorprinter - invalid value of precision");
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if (strcasecmp(text, "printatstart") == 0)
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infile >> printtimeid >> ws >> text >> ws;
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else
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printtimeid = 0;
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if (printtimeid != 0 && printtimeid != 1)
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handle.logFileMessage(LOGFAIL, "\nError in predatorprinter - invalid value of printatstart");
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if (strcasecmp(text, "yearsandsteps") != 0)
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handle.logFileUnexpected(LOGFAIL, "yearsandsteps", text);
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if (!AAT.readFromFile(infile, TimeInfo))
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handle.logFileMessage(LOGFAIL, "\nError in predatorprinter - wrong format for yearsandsteps");
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//prepare for next printfile component
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infile >> ws;
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if (!infile.eof()) {
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infile >> text >> ws;
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if (strcasecmp(text, "[component]") != 0)
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handle.logFileUnexpected(LOGFAIL, "[component]", text);
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}
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//finished initializing - now print first lines
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outfile << "; ";
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RUNID.Print(outfile);
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outfile << "; Predation output file for the following predators";
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for (i = 0; i < predatornames.Size(); i++)
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outfile << sep << predatornames[i];
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outfile << "\n; Consuming the following preys";
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for (i = 0; i < preynames.Size(); i++)
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outfile << sep << preynames[i];
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if (printtimeid == 0)
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outfile << "\n; Printing the following information at the end of each timestep";
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else
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outfile << "\n; Printing the following information at the start of each timestep";
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if (biomass)
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outfile << "\n; year-step-area-pred length-prey length-biomass consumed\n";
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else
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outfile << "\n; year-step-area-pred length-prey length-number consumed\n";
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outfile.flush();
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}
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void PredatorPrinter::setPredAndPrey(PredatorPtrVector& predatorvec,
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PreyPtrVector& preyvec, const AreaClass* const Area) {
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PredatorPtrVector predators;
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PreyPtrVector preys;
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int i, j, k, found;
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delete aggregator;
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for (i = 0; i < predatorvec.Size(); i++)
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for (j = 0; j < predatornames.Size(); j++)
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if (strcasecmp(predatorvec[i]->getName(), predatornames[j]) == 0)
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predators.resize(predatorvec[i]);
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for (i = 0; i < preyvec.Size(); i++)
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for (j = 0; j < preynames.Size(); j++)
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if (strcasecmp(preyvec[i]->getName(), preynames[j]) == 0)
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preys.resize(preyvec[i]);
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//change from outer areas to inner areas
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for (i = 0; i < areas.Nrow(); i++)
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for (j = 0; j < areas.Ncol(i); j++)
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areas[i][j] = Area->getInnerArea(areas[i][j]);
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//check predator and prey areas and length groups
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if (handle.getLogLevel() >= LOGWARN) {
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for (j = 0; j < areas.Nrow(); j++) {
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found = 0;
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for (i = 0; i < predators.Size(); i++)
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for (k = 0; k < areas.Ncol(j); k++)
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if (predators[i]->isInArea(areas[j][k]))
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found++;
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if (found == 0)
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handle.logMessage(LOGWARN, "Warning in predatorprinter - predators not defined on all areas");
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}
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found = 0;
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for (i = 0; i < predators.Size(); i++)
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if (predLgrpDiv->maxLength(0) > predators[i]->getLengthGroupDiv()->minLength())
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found++;
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if (found == 0)
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handle.logMessage(LOGWARN, "Warning in predatorprinter - minimum length group less than predator length");
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found = 0;
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for (i = 0; i < predators.Size(); i++)
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if (predLgrpDiv->minLength(predLgrpDiv->numLengthGroups()) < predators[i]->getLengthGroupDiv()->maxLength())
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found++;
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if (found == 0)
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handle.logMessage(LOGWARN, "Warning in predatorprinter - maximum length group greater than predator length");
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for (j = 0; j < areas.Nrow(); j++) {
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found = 0;
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for (i = 0; i < preys.Size(); i++)
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for (k = 0; k < areas.Ncol(j); k++)
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if (preys[i]->isInArea(areas[j][k]))
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found++;
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if (found == 0)
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handle.logMessage(LOGWARN, "Warning in predatorprinter - preys not defined on all areas");
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}
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found = 0;
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for (i = 0; i < preys.Size(); i++)
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if (preyLgrpDiv->maxLength(0) > preys[i]->getLengthGroupDiv()->minLength())
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found++;
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if (found == 0)
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handle.logMessage(LOGWARN, "Warning in predatorprinter - minimum length group less than prey length");
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found = 0;
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for (i = 0; i < preys.Size(); i++)
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if (preyLgrpDiv->minLength(preyLgrpDiv->numLengthGroups()) < preys[i]->getLengthGroupDiv()->maxLength())
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found++;
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if (found == 0)
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handle.logMessage(LOGWARN, "Warning in predatorprinter - maximum length group greater than prey length");
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}
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if (predators.Size() != predatornames.Size()) {
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handle.logMessage(LOGWARN, "Error in predatorprinter - failed to match predators");
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for (i = 0; i < predatorvec.Size(); i++)
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handle.logMessage(LOGWARN, "Error in predatorprinter - found predator", predatorvec[i]->getName());
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for (i = 0; i < predatornames.Size(); i++)
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handle.logMessage(LOGWARN, "Error in predatorprinter - looking for predator", predatornames[i]);
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handle.logMessage(LOGFAIL, ""); //JMB this will exit gadget
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}
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if (preys.Size() != preynames.Size()) {
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handle.logMessage(LOGWARN, "Error in predatorprinter - failed to match preys");
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for (i = 0; i < preyvec.Size(); i++)
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handle.logMessage(LOGWARN, "Error in predatorprinter - found prey", preyvec[i]->getName());
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for (i = 0; i < preynames.Size(); i++)
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handle.logMessage(LOGWARN, "Error in predatorprinter - looking for prey", preynames[i]);
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handle.logMessage(LOGFAIL, ""); //JMB this will exit gadget
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}
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for (i = 0; i < predators.Size(); i++)
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for (j = 0; j < predators.Size(); j++)
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| 259 : |
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if ((strcasecmp(predators[i]->getName(), predators[j]->getName()) == 0) && (i != j))
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handle.logMessage(LOGFAIL, "Error in predatorprinter - repeated predator", predators[i]->getName());
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for (i = 0; i < preys.Size(); i++)
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| 263 : |
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for (j = 0; j < preys.Size(); j++)
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| 264 : |
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if ((strcasecmp(preys[i]->getName(), preys[j]->getName()) == 0) && (i != j))
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| 265 : |
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handle.logMessage(LOGFAIL, "Error in predatorprinter - repeated prey", preys[i]->getName());
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| 266 : |
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| 267 : |
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aggregator = new PredatorAggregator(predators, preys, areas, predLgrpDiv, preyLgrpDiv);
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| 268 : |
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}
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| 269 : |
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void PredatorPrinter::Print(const TimeClass* const TimeInfo, int printtime) {
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| 271 : |
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| 272 : |
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if ((!AAT.atCurrentTime(TimeInfo)) || (printtime != printtimeid))
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| 273 : |
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return;
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| 274 : |
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| 275 : |
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if (biomass)
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| 276 : |
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aggregator->Sum();
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| 277 : |
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else
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| 278 : |
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aggregator->NumberSum();
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| 279 : |
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| 280 : |
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int a, predl, preyl;
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| 281 : |
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for (a = 0; a < areas.Nrow(); a++) {
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| 282 : |
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dptr = aggregator->getSum()[a];
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| 283 : |
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for (predl = 0; predl < dptr->Nrow(); predl++) {
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| 284 : |
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for (preyl = 0; preyl < dptr->Ncol(predl); preyl++) {
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| 285 : |
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outfile << setw(lowwidth) << TimeInfo->getYear() << sep
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| 286 : |
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<< setw(lowwidth) << TimeInfo->getStep() << sep
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| 287 : |
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<< setw(printwidth) << areaindex[a] << sep
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| 288 : |
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<< setw(printwidth) << predlenindex[predl] << sep
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| 289 : |
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<< setw(printwidth) << preylenindex[preyl] << sep;
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| 290 : |
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| 291 : |
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//JMB crude filter to remove the 'silly' values from the output
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| 292 : |
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if ((*dptr)[predl][preyl] < rathersmall)
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| 293 : |
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outfile << setw(width) << 0 << endl;
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| 294 : |
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else
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| 295 : |
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outfile << setprecision(precision) << setw(width) << (*dptr)[predl][preyl] << endl;
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| 296 : |
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}
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| 297 : |
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}
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| 298 : |
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}
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| 299 : |
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outfile.flush();
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| 300 : |
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}
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| 301 : |
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| 302 : |
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PredatorPrinter::~PredatorPrinter() {
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| 303 : |
|
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outfile.close();
|
| 304 : |
|
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outfile.clear();
|
| 305 : |
|
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delete predLgrpDiv;
|
| 306 : |
|
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delete preyLgrpDiv;
|
| 307 : |
|
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delete aggregator;
|
| 308 : |
|
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int i;
|
| 309 : |
|
|
for (i = 0; i < predatornames.Size(); i++)
|
| 310 : |
|
|
delete[] predatornames[i];
|
| 311 : |
|
|
for (i = 0; i < preynames.Size(); i++)
|
| 312 : |
|
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delete[] preynames[i];
|
| 313 : |
|
|
for (i = 0; i < areaindex.Size(); i++)
|
| 314 : |
|
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delete[] areaindex[i];
|
| 315 : |
|
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for (i = 0; i < preylenindex.Size(); i++)
|
| 316 : |
|
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delete[] preylenindex[i];
|
| 317 : |
|
|
for (i = 0; i < predlenindex.Size(); i++)
|
| 318 : |
|
|
delete[] predlenindex[i];
|
| 319 : |
|
|
}
|
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