#include "predatoroverprinter.h"
#include "conversionindex.h"
#include "predatoroveraggregator.h"
#include "areatime.h"
#include "readfunc.h"
#include "readword.h"
#include "readaggregation.h"
#include "errorhandler.h"
#include "predator.h"
#include "gadget.h"
#include "runid.h"
#include "global.h"
PredatorOverPrinter::PredatorOverPrinter(CommentStream& infile, const TimeClass* const TimeInfo)
: Printer(PREDATOROVERPRINTER), predLgrpDiv(0), aggregator(0), dptr(0) {
char text[MaxStrLength];
strncpy(text, "", MaxStrLength);
int i, j;
//read in the predator names
i = 0;
infile >> text >> ws;
if ((strcasecmp(text, "predators") != 0) && (strcasecmp(text, "predatornames") != 0))
handle.logFileUnexpected(LOGFAIL, "predatornames", text);
infile >> text >> ws;
while (!infile.eof() && (strcasecmp(text, "areaaggfile") != 0)) {
predatornames.resize(new char[strlen(text) + 1]);
strcpy(predatornames[i++], text);
infile >> text >> ws;
}
if (predatornames.Size() == 0)
handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - failed to read predators");
handle.logMessage(LOGMESSAGE, "Read predator data - number of predators", predatornames.Size());
//read in area aggregation from file
filename = new char[MaxStrLength];
strncpy(filename, "", MaxStrLength);
ifstream datafile;
CommentStream subdata(datafile);
infile >> filename >> ws;
datafile.open(filename, ios::in);
handle.checkIfFailure(datafile, filename);
handle.Open(filename);
i = readAggregation(subdata, areas, areaindex);
handle.Close();
datafile.close();
datafile.clear();
//read in length aggregation from file
DoubleVector lengths;
readWordAndValue(infile, "lenaggfile", filename);
datafile.open(filename, ios::in);
handle.checkIfFailure(datafile, filename);
handle.Open(filename);
i = readLengthAggregation(subdata, lengths, lenindex);
handle.Close();
datafile.close();
datafile.clear();
//Finished reading from infile.
predLgrpDiv = new LengthGroupDivision(lengths);
if (predLgrpDiv->Error())
handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - failed to create length group");
//Open the printfile
readWordAndValue(infile, "printfile", filename);
outfile.open(filename, ios::out);
handle.checkIfFailure(outfile, filename);
infile >> text >> ws;
if (strcasecmp(text, "precision") == 0) {
infile >> precision >> ws >> text >> ws;
width = precision + 4;
} else {
// use default values
precision = largeprecision;
width = largewidth;
}
if (precision < 0)
handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - invalid value of precision");
if (strcasecmp(text, "printatstart") == 0)
infile >> printtimeid >> ws >> text >> ws;
else
printtimeid = 0;
if (printtimeid != 0 && printtimeid != 1)
handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - invalid value of printatstart");
if (strcasecmp(text, "yearsandsteps") != 0)
handle.logFileUnexpected(LOGFAIL, "yearsandsteps", text);
if (!AAT.readFromFile(infile, TimeInfo))
handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - wrong format for yearsandsteps");
//prepare for next printfile component
infile >> ws;
if (!infile.eof()) {
infile >> text >> ws;
if (strcasecmp(text, "[component]") != 0)
handle.logFileUnexpected(LOGFAIL, "[component]", text);
}
//finished initializing. Now print first lines
outfile << "; ";
RUNID.Print(outfile);
outfile << "; Predator overconsumption output file for the following predators";
for (i = 0; i < predatornames.Size(); i++)
outfile << sep << predatornames[i];
if (printtimeid == 0)
outfile << "\n; Printing the following information at the end of each timestep";
else
outfile << "\n; Printing the following information at the start of each timestep";
outfile << "\n; year-step-area-length-overconsumption biomass\n";
outfile.flush();
}
void PredatorOverPrinter::setPredator(PredatorPtrVector& predatorvec, const AreaClass* const Area) {
PredatorPtrVector predators;
delete aggregator;
int i, j, k, found;
for (i = 0; i < predatorvec.Size(); i++)
for (j = 0; j < predatornames.Size(); j++)
if (strcasecmp(predatorvec[i]->getName(), predatornames[j]) == 0)
predators.resize(predatorvec[i]);
if (predators.Size() != predatornames.Size()) {
handle.logMessage(LOGWARN, "Error in predatoroverprinter - failed to match predators");
for (i = 0; i < predatorvec.Size(); i++)
handle.logMessage(LOGWARN, "Error in predatoroverprinter - found predator", predatorvec[i]->getName());
for (i = 0; i < predatornames.Size(); i++)
handle.logMessage(LOGWARN, "Error in predatoroverprinter - looking for predator", predatornames[i]);
handle.logMessage(LOGFAIL, ""); //JMB this will exit gadget
}
for (i = 0; i < predators.Size(); i++)
for (j = 0; j < predators.Size(); j++)
if ((strcasecmp(predators[i]->getName(), predators[j]->getName()) == 0) && (i != j))
handle.logMessage(LOGFAIL, "Error in predatoroverprinter - repeated predator", predators[i]->getName());
//change from outer areas to inner areas.
for (i = 0; i < areas.Nrow(); i++)
for (j = 0; j < areas.Ncol(i); j++)
areas[i][j] = Area->getInnerArea(areas[i][j]);
//check predator areas and lengths
if (handle.getLogLevel() >= LOGWARN) {
for (j = 0; j < areas.Nrow(); j++) {
found = 0;
for (i = 0; i < predators.Size(); i++)
for (k = 0; k < areas.Ncol(j); k++)
if (predators[i]->isInArea(areas[j][k]))
found++;
if (found == 0)
handle.logMessage(LOGWARN, "Warning in predatoroverprinter - predator not defined on all areas");
}
found = 0;
for (i = 0; i < predators.Size(); i++)
if (predLgrpDiv->maxLength(0) > predators[i]->getLengthGroupDiv()->minLength())
found++;
if (found == 0)
handle.logMessage(LOGWARN, "Warning in predatoroverprinter - minimum length group less than predator length");
found = 0;
for (i = 0; i < predators.Size(); i++)
if (predLgrpDiv->minLength(predLgrpDiv->numLengthGroups()) < predators[i]->getLengthGroupDiv()->maxLength())
found++;
if (found == 0)
handle.logMessage(LOGWARN, "Warning in predatoroverprinter - maximum length group greater than predator length");
}
aggregator = new PredatorOverAggregator(predators, areas, predLgrpDiv);
}
void PredatorOverPrinter::Print(const TimeClass* const TimeInfo, int printtime) {
if ((!AAT.atCurrentTime(TimeInfo)) || (printtime != printtimeid))
return;
aggregator->Sum();
dptr = &aggregator->getSum();
int a, len;
for (a = 0; a < areas.Nrow(); a++) {
for (len = 0; len < dptr->Ncol(a); len++) {
outfile << setw(lowwidth) << TimeInfo->getYear() << sep
<< setw(lowwidth) << TimeInfo->getStep() << sep
<< setw(printwidth) << areaindex[a] << sep
<< setw(printwidth) << lenindex[len] << sep;
//JMB crude filter to remove the 'silly' values from the output
if ((*dptr)[a][len] < rathersmall)
outfile << setw(width) << 0 << endl;
else
outfile << setprecision(precision) << setw(width) << (*dptr)[a][len] << endl;
}
}
outfile.flush();
}
PredatorOverPrinter::~PredatorOverPrinter() {
outfile.close();
outfile.clear();
delete predLgrpDiv;
delete aggregator;
int i;
for (i = 0; i < predatornames.Size(); i++)
delete[] predatornames[i];
for (i = 0; i < areaindex.Size(); i++)
delete[] areaindex[i];
for (i = 0; i < lenindex.Size(); i++)
delete[] lenindex[i];
}