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agomez |
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#include "predatoroverprinter.h" |
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#include "conversionindex.h" |
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#include "predatoroveraggregator.h" |
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#include "areatime.h" |
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#include "readfunc.h" |
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#include "readword.h" |
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#include "readaggregation.h" |
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#include "errorhandler.h" |
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#include "predator.h" |
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#include "gadget.h" |
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#include "runid.h" |
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#include "global.h" |
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PredatorOverPrinter::PredatorOverPrinter(CommentStream& infile, const TimeClass* const TimeInfo)
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: Printer(PREDATOROVERPRINTER), predLgrpDiv(0), aggregator(0), dptr(0) {
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char text[MaxStrLength];
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strncpy(text, "", MaxStrLength);
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int i, j;
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//read in the predator names
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i = 0;
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infile >> text >> ws;
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if ((strcasecmp(text, "predators") != 0) && (strcasecmp(text, "predatornames") != 0))
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handle.logFileUnexpected(LOGFAIL, "predatornames", text);
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infile >> text >> ws;
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while (!infile.eof() && (strcasecmp(text, "areaaggfile") != 0)) {
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predatornames.resize(new char[strlen(text) + 1]);
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strcpy(predatornames[i++], text);
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infile >> text >> ws;
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}
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if (predatornames.Size() == 0)
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handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - failed to read predators");
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handle.logMessage(LOGMESSAGE, "Read predator data - number of predators", predatornames.Size());
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//read in area aggregation from file
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filename = new char[MaxStrLength];
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strncpy(filename, "", MaxStrLength);
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ifstream datafile;
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CommentStream subdata(datafile);
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infile >> filename >> ws;
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datafile.open(filename, ios::in);
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handle.checkIfFailure(datafile, filename);
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handle.Open(filename);
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i = readAggregation(subdata, areas, areaindex);
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handle.Close();
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datafile.close();
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datafile.clear();
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//read in length aggregation from file
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DoubleVector lengths;
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readWordAndValue(infile, "lenaggfile", filename);
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datafile.open(filename, ios::in);
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handle.checkIfFailure(datafile, filename);
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handle.Open(filename);
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i = readLengthAggregation(subdata, lengths, lenindex);
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handle.Close();
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datafile.close();
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datafile.clear();
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//Finished reading from infile.
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predLgrpDiv = new LengthGroupDivision(lengths);
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if (predLgrpDiv->Error())
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handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - failed to create length group");
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//Open the printfile
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readWordAndValue(infile, "printfile", filename);
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outfile.open(filename, ios::out);
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handle.checkIfFailure(outfile, filename);
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infile >> text >> ws;
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if (strcasecmp(text, "precision") == 0) {
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infile >> precision >> ws >> text >> ws;
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width = precision + 4;
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} else {
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// use default values
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precision = largeprecision;
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width = largewidth;
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}
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if (precision < 0)
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handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - invalid value of precision");
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if (strcasecmp(text, "printatstart") == 0)
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infile >> printtimeid >> ws >> text >> ws;
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else
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printtimeid = 0;
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if (printtimeid != 0 && printtimeid != 1)
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handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - invalid value of printatstart");
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if (strcasecmp(text, "yearsandsteps") != 0)
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handle.logFileUnexpected(LOGFAIL, "yearsandsteps", text);
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if (!AAT.readFromFile(infile, TimeInfo))
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handle.logFileMessage(LOGFAIL, "\nError in predatoroverprinter - wrong format for yearsandsteps");
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//prepare for next printfile component
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infile >> ws;
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if (!infile.eof()) {
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infile >> text >> ws;
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if (strcasecmp(text, "[component]") != 0)
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handle.logFileUnexpected(LOGFAIL, "[component]", text);
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}
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//finished initializing. Now print first lines
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outfile << "; ";
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RUNID.Print(outfile);
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outfile << "; Predator overconsumption output file for the following predators";
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for (i = 0; i < predatornames.Size(); i++)
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outfile << sep << predatornames[i];
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if (printtimeid == 0)
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outfile << "\n; Printing the following information at the end of each timestep";
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else
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outfile << "\n; Printing the following information at the start of each timestep";
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outfile << "\n; year-step-area-length-overconsumption biomass\n";
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outfile.flush();
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}
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void PredatorOverPrinter::setPredator(PredatorPtrVector& predatorvec, const AreaClass* const Area) {
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PredatorPtrVector predators;
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delete aggregator;
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int i, j, k, found;
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for (i = 0; i < predatorvec.Size(); i++)
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for (j = 0; j < predatornames.Size(); j++)
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if (strcasecmp(predatorvec[i]->getName(), predatornames[j]) == 0)
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predators.resize(predatorvec[i]);
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if (predators.Size() != predatornames.Size()) {
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handle.logMessage(LOGWARN, "Error in predatoroverprinter - failed to match predators");
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for (i = 0; i < predatorvec.Size(); i++)
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handle.logMessage(LOGWARN, "Error in predatoroverprinter - found predator", predatorvec[i]->getName());
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for (i = 0; i < predatornames.Size(); i++)
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handle.logMessage(LOGWARN, "Error in predatoroverprinter - looking for predator", predatornames[i]);
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handle.logMessage(LOGFAIL, ""); //JMB this will exit gadget
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}
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for (i = 0; i < predators.Size(); i++)
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for (j = 0; j < predators.Size(); j++)
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if ((strcasecmp(predators[i]->getName(), predators[j]->getName()) == 0) && (i != j))
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handle.logMessage(LOGFAIL, "Error in predatoroverprinter - repeated predator", predators[i]->getName());
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//change from outer areas to inner areas.
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for (i = 0; i < areas.Nrow(); i++)
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for (j = 0; j < areas.Ncol(i); j++)
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areas[i][j] = Area->getInnerArea(areas[i][j]);
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//check predator areas and lengths
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if (handle.getLogLevel() >= LOGWARN) {
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for (j = 0; j < areas.Nrow(); j++) {
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found = 0;
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for (i = 0; i < predators.Size(); i++)
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for (k = 0; k < areas.Ncol(j); k++)
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if (predators[i]->isInArea(areas[j][k]))
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found++;
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if (found == 0)
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handle.logMessage(LOGWARN, "Warning in predatoroverprinter - predator not defined on all areas");
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}
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found = 0;
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for (i = 0; i < predators.Size(); i++)
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if (predLgrpDiv->maxLength(0) > predators[i]->getLengthGroupDiv()->minLength())
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found++;
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if (found == 0)
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handle.logMessage(LOGWARN, "Warning in predatoroverprinter - minimum length group less than predator length");
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found = 0;
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for (i = 0; i < predators.Size(); i++)
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if (predLgrpDiv->minLength(predLgrpDiv->numLengthGroups()) < predators[i]->getLengthGroupDiv()->maxLength())
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found++;
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if (found == 0)
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handle.logMessage(LOGWARN, "Warning in predatoroverprinter - maximum length group greater than predator length");
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}
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aggregator = new PredatorOverAggregator(predators, areas, predLgrpDiv);
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}
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void PredatorOverPrinter::Print(const TimeClass* const TimeInfo, int printtime) {
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if ((!AAT.atCurrentTime(TimeInfo)) || (printtime != printtimeid))
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return;
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aggregator->Sum();
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dptr = &aggregator->getSum();
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int a, len;
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for (a = 0; a < areas.Nrow(); a++) {
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for (len = 0; len < dptr->Ncol(a); len++) {
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outfile << setw(lowwidth) << TimeInfo->getYear() << sep
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<< setw(lowwidth) << TimeInfo->getStep() << sep
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<< setw(printwidth) << areaindex[a] << sep
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<< setw(printwidth) << lenindex[len] << sep;
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//JMB crude filter to remove the 'silly' values from the output
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if ((*dptr)[a][len] < rathersmall)
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outfile << setw(width) << 0 << endl;
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else
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outfile << setprecision(precision) << setw(width) << (*dptr)[a][len] << endl;
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}
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}
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outfile.flush();
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}
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PredatorOverPrinter::~PredatorOverPrinter() {
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outfile.close();
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outfile.clear();
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delete predLgrpDiv;
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delete aggregator;
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int i;
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for (i = 0; i < predatornames.Size(); i++)
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delete[] predatornames[i];
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for (i = 0; i < areaindex.Size(); i++)
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delete[] areaindex[i];
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for (i = 0; i < lenindex.Size(); i++)
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delete[] lenindex[i];
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}
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