| 1 : |
agomez |
1 |
#include "migrationpenalty.h" |
| 2 : |
|
|
#include "errorhandler.h" |
| 3 : |
|
|
#include "readword.h" |
| 4 : |
|
|
#include "gadget.h" |
| 5 : |
|
|
#include "global.h" |
| 6 : |
|
|
|
| 7 : |
|
|
MigrationPenalty::MigrationPenalty(CommentStream& infile, double weight, const char* name)
|
| 8 : |
|
|
: Likelihood(MIGRATIONPENALTYLIKELIHOOD, weight, name), powercoeffs(2) {
|
| 9 : |
|
|
|
| 10 : |
|
|
char text[MaxStrLength];
|
| 11 : |
|
|
stockname = new char[MaxStrLength];
|
| 12 : |
|
|
strncpy(text, "", MaxStrLength);
|
| 13 : |
|
|
strncpy(stockname, "", MaxStrLength);
|
| 14 : |
|
|
|
| 15 : |
|
|
readWordAndValue(infile, "stockname", stockname);
|
| 16 : |
|
|
readWordAndTwoVariables(infile, "powercoeffs", powercoeffs[0], powercoeffs[1]);
|
| 17 : |
|
|
|
| 18 : |
|
|
//prepare for next likelihood component
|
| 19 : |
|
|
infile >> ws;
|
| 20 : |
|
|
if (!infile.eof()) {
|
| 21 : |
|
|
infile >> text >> ws;
|
| 22 : |
|
|
if (strcasecmp(text, "[component]") != 0)
|
| 23 : |
|
|
handle.logFileUnexpected(LOGFAIL, "[component]", text);
|
| 24 : |
|
|
}
|
| 25 : |
|
|
}
|
| 26 : |
|
|
|
| 27 : |
|
|
void MigrationPenalty::addLikelihood(const TimeClass* const TimeInfo) {
|
| 28 : |
|
|
if (TimeInfo->getTime() != TimeInfo->numTotalSteps())
|
| 29 : |
|
|
return;
|
| 30 : |
|
|
|
| 31 : |
|
|
if (handle.getLogLevel() >= LOGMESSAGE)
|
| 32 : |
|
|
handle.logMessage(LOGMESSAGE, "Calculating likelihood score for migrationpenalty component", this->getName());
|
| 33 : |
|
|
|
| 34 : |
|
|
int i;
|
| 35 : |
|
|
double l = 0.0;
|
| 36 : |
|
|
if (stock->doesMigrate()) {
|
| 37 : |
|
|
DoubleVector penalty(stock->getMigration()->getPenalty());
|
| 38 : |
|
|
for (i = 0; i < penalty.Size(); i++)
|
| 39 : |
|
|
l += pow(penalty[i], powercoeffs[0]);
|
| 40 : |
|
|
l = pow(l, powercoeffs[1]);
|
| 41 : |
|
|
likelihood += l;
|
| 42 : |
|
|
}
|
| 43 : |
|
|
if (handle.getLogLevel() >= LOGMESSAGE)
|
| 44 : |
|
|
handle.logMessage(LOGMESSAGE, "The likelihood score for this component on this timestep is", l);
|
| 45 : |
|
|
}
|
| 46 : |
|
|
|
| 47 : |
|
|
void MigrationPenalty::setFleetsAndStocks(FleetPtrVector& Fleets, StockPtrVector& Stocks) {
|
| 48 : |
|
|
int i;
|
| 49 : |
|
|
int found = 0;
|
| 50 : |
|
|
for (i = 0; i < Stocks.Size(); i++)
|
| 51 : |
|
|
if (strcasecmp(stockname, Stocks[i]->getName()) == 0) {
|
| 52 : |
|
|
found++;
|
| 53 : |
|
|
stock = Stocks[i];
|
| 54 : |
|
|
}
|
| 55 : |
|
|
|
| 56 : |
|
|
if (found != 1)
|
| 57 : |
|
|
handle.logMessage(LOGFAIL, "Error in migrationpenalty - failed to match stock", stockname);
|
| 58 : |
|
|
if (!(stock->doesMigrate()))
|
| 59 : |
|
|
handle.logMessage(LOGWARN, "Warning in migrationpenalty - stock doesnt migrate");
|
| 60 : |
|
|
}
|
| 61 : |
|
|
|
| 62 : |
|
|
MigrationPenalty::~MigrationPenalty() {
|
| 63 : |
|
|
delete[] stockname;
|
| 64 : |
|
|
}
|
| 65 : |
|
|
|
| 66 : |
|
|
void MigrationPenalty::Reset(const Keeper* const keeper) {
|
| 67 : |
|
|
Likelihood::Reset(keeper);
|
| 68 : |
|
|
if (handle.getLogLevel() >= LOGMESSAGE)
|
| 69 : |
|
|
handle.logMessage(LOGMESSAGE, "Reset migrationpenalty component");
|
| 70 : |
|
|
}
|
| 71 : |
|
|
|
| 72 : |
|
|
void MigrationPenalty::printSummary(ofstream& outfile) {
|
| 73 : |
|
|
//JMB there is only one likelihood score here ...
|
| 74 : |
|
|
if (!(isZero(likelihood))) {
|
| 75 : |
|
|
outfile << "all all all" << sep << setw(largewidth) << this->getName() << sep
|
| 76 : |
|
|
<< setprecision(smallprecision) << setw(smallwidth) << weight << sep
|
| 77 : |
|
|
<< setprecision(largeprecision) << setw(largewidth) << likelihood << endl;
|
| 78 : |
|
|
outfile.flush();
|
| 79 : |
|
|
}
|
| 80 : |
|
|
}
|
| 81 : |
|
|
|
| 82 : |
|
|
void MigrationPenalty::Print(ofstream& outfile) const {
|
| 83 : |
|
|
outfile << "\nMigration Penalty " << this->getName() << " - likelihood value "
|
| 84 : |
|
|
<< likelihood << endl;
|
| 85 : |
|
|
outfile.flush();
|
| 86 : |
|
|
}
|
Parent Directory
Revision Log