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#ifndef maininfo_h
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#define maininfo_h
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#include "gadget.h" |
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#include "commentstream.h" |
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#include "printinfo.h" |
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/**
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* \class MainInfo
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* \brief This is the class used to store information for the current model given from the command-line
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*/
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class MainInfo {
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public:
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/**
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* \brief This is the MainInfo constructor
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*/
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MainInfo();
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/**
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* \brief This is the default MainInfo destructor
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*/
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~MainInfo();
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/**
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* \brief This function will print an error message, brief help information and then exit
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* \param error is the error message
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*/
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void showCorrectUsage(char* error);
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/**
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* \brief This function will print help information and then exit
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*/
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void showUsage();
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/**
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* \brief This function will check the options that have been specified on the commandline
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* \param inputdir is the name of the directory containing the input files to the model
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* \param workingdir is the name of the directory used for the output from the model
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*/
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void checkUsage(const char* const inputdir, const char* const workingdir);
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/**
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* \brief This function will read input from the command line
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* \param aNumber is the number of command line entries
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* \param aVector contains the command line entries
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*/
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void read(int aNumber, char* const aVector[]);
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/**
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* \brief This function will store the filename that the initial model information will be written to
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* \param filename is the name of the file
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*/
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void setPrintInitialFile(char* filename);
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/**
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* \brief This function will store the filename that the final model information will be written to
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* \param filename is the name of the file
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*/
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void setPrintFinalFile(char* filename);
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agomez |
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#ifdef _OPENMP
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agomez |
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/**
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agomez |
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* \brief This function will store parallel options
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*/
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void setParallel(char* filename);
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#endif
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/**
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agomez |
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* \brief This function will store the filename that the initial values for the model parameters will be read from
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* \param filename is the name of the file
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*/
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void setInitialParamFile(char* filename);
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/**
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* \brief This function will store the filename that the main model information will be read from
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* \param filename is the name of the file
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*/
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void setMainGadgetFile(char* filename);
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/**
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* \brief This function will store the filename that the optimisation information will be read from
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* \param filename is the name of the file
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*/
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void setOptInfoFile(char* filename);
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/**
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* \brief This function will return the flag used to determine whether the likelihood score should be optimised
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* \return flag
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*/
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int runOptimise() const { return runoptimise; };
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/**
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* \brief This function will return the flag used to determine whether a simulation run should be performed
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* \return flag
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*/
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int runStochastic() const { return runstochastic; };
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/**
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* \brief This function will return the flag used to determine whether the current simulation has been started using paramin
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* \return flag
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*/
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int runNetwork() const { return runnetwork; };
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/**
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* \brief This function will return the flag used to determine whether the current simulation should print the model output
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* \return flag
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*/
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int runPrint() const { return runprint; };
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agomez |
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#ifdef _OPENMP
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/**
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agomez |
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* \brief This function will return the flag used to determine whether the current simulation should print the model output
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* \return flag
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*/
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int runParallel() const { return runparallel; };
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#endif
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/**
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agomez |
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* \brief This function will return the flag used to determine whether the optimisation parameters have been given
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* \return flag
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*/
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int getOptInfoGiven() const { return givenOptInfo; };
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/**
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* \brief This function will return the flag used to determine whether the initial values for the model parameters have been given
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* \return flag
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*/
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int getInitialParamGiven() const { return givenInitialParam; };
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/**
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* \brief This function will return the flag used to force the model to print the model output to file
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* \return flag
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*/
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int getForcePrint() const { return forceprint; };
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/**
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* \brief This function will return the PrintInfo used to store printing information
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* \return pi, the PrintInfo containing the printing information
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*/
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PrintInfo getPI() const { return printinfo; };
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/**
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* \brief This function will return the flag used to determine whether the initial model information should be printed to file
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* \return flag
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*/
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int printInitial() const { return printInitialInfo; };
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/**
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* \brief This function will return the flag used to determine whether the final model information should be printed to file
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* \return flag
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*/
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int printFinal() const { return printFinalInfo; };
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/**
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* \brief This function will return the filename that the initial values for the model parameters will be read from
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* \return filename
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*/
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char* getInitialParamFile() const { return strInitialParamFile; };
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/**
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* \brief This function will return the filename that the initial model information will be written to
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* \return filename
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*/
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char* getPrintInitialFile() const { return strPrintInitialFile; };
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/**
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* \brief This function will return the filename that the final model information will be written to
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* \return filename
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*/
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char* getPrintFinalFile() const { return strPrintFinalFile; };
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/**
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* \brief This function will return the filename that the main model information will be read from
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* \return filename
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*/
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char* getMainGadgetFile() const { return strMainGadgetFile; };
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/**
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* \brief This function will return the filename that the optimisation information will be read from
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* \return filename
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*/
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char* getOptInfoFile() const { return strOptInfoFile; };
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/**
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* \brief This function will return the maximum ratio of a stock that can be consumed on any given timestep
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* \return maxratio
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*/
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ulcessvp |
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double getMaxRatio() const {
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return maxratio;
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}
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/**
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* \brief This function will return seeds used in SA
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* \return seed array of unsigned int with the seeds used in SA
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*/
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unsigned* getSeed() const {return seed;};
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ulcessvp |
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agomez |
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private:
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/**
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* \brief This function will read input from a file instead of the command line
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* \param file is the CommentStream to read from
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*/
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void read(CommentStream& file);
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/**
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* \brief This is the name of the file that optimisation parameters will be read from
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*/
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char* strOptInfoFile;
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/**
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* \brief This is the name of the file that initial values for the model parameters will be read from
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*/
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char* strInitialParamFile;
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/**
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* \brief This is the name of the file that the initial model information will be written to
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*/
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char* strPrintInitialFile;
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/**
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* \brief This is the name of the file that the final model information will be written to
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*/
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char* strPrintFinalFile;
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/**
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* \brief This is the name of the file that the main model information will be read from
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*/
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char* strMainGadgetFile;
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/**
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* \brief This is the PrintInfo used to store information about the format the model parameters should be written to file
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*/
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PrintInfo printinfo;
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/**
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* \brief This is the flag used to denote whether the optimisation parameters have been given or not
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*/
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int givenOptInfo;
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/**
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* \brief This is the flag used to denote whether the initial values for the model parameters have been given or not
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*/
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int givenInitialParam;
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/**
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* \brief This is the flag used to denote whether the likelihood score should be optimised or not
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*/
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int runoptimise;
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/**
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* \brief This is the flag used to denote whether a simulation run should be performed or not
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*/
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int runstochastic;
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/**
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* \brief This is the flag used to denote whether the current simulation has been started using paramin (PVM) or not
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*/
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int runnetwork;
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/**
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* \brief This is the flag used to denote whether the current simulation should print model output or not
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*/
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int runprint;
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/**
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* \brief This is the flag used to override the default settings and force the model to print model output at the end of an optimisation run
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*/
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int forceprint;
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/**
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* \brief This is the flag used to denote whether the initial model information should be printed or not
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*/
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int printInitialInfo;
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/**
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* \brief This is the flag used to denote whether the final model information should be printed or not
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*/
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int printFinalInfo;
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/**
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* \brief This is the value used to decide on the level of warnings displayed during the model run
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*/
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int printLogLevel;
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/**
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* \brief This is the maximum ratio of a stock that can be consumed on any given timestep
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*/
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double maxratio;
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ulcessvp |
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/**
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* \brief vector with the seeds used in SA
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* \note see[0] = seed | see[1] = seedM | see[2] = seedP
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*/
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ulcessvp |
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unsigned* seed;
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agomez |
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#ifdef _OPENMP
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/**
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* \brief This is the flag used to denote whether the likelihood score should be optimised in pararrel */
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int runparallel;
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#endif
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};
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#endif
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ulcessvp |
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