--- trunk/gadget/maininfo.h	2015/07/23 19:00:38	11
+++ trunk/gadget/maininfo.h	2017/04/07 09:20:55	20
@@ -50,6 +50,12 @@
    * \param filename is the name of the file
    */
   void setPrintFinalFile(char* filename);
+#ifdef _OPENMP
+  /**
+   * \brief This function will store parallel options 
+   */
+  void setParallel(char* filename);
+#endif
   /**
    * \brief This function will store the filename that the initial values for the model parameters will be read from
    * \param filename is the name of the file
@@ -70,8 +76,6 @@
    * \return flag
    */
   int runOptimise() const { return runoptimise; };
-  //FIXME doc
-    int runOmp() const { return runomp; };
   /**
    * \brief This function will return the flag used to determine whether a simulation run should be performed
    * \return flag
@@ -87,6 +91,13 @@
    * \return flag
    */
   int runPrint() const { return runprint; };
+#ifdef _OPENMP
+  /**
+   * \brief This function will return the flag used to determine whether the current simulation should print the model output
+   * \return flag
+   */
+  int runParallel() const { return runparallel; };
+#endif
   /**
    * \brief This function will return the flag used to determine whether the optimisation parameters have been given
    * \return flag
@@ -146,14 +157,14 @@
    * \brief This function will return the maximum ratio of a stock that can be consumed on any given timestep
    * \return maxratio
    */
-	double getMaxRatio() const {
-		return maxratio;
-	}
-	unsigned* getSeed() const {return seed;}
-//	unsigned getSeedM() const {return seedM;}
-//	unsigned getSeedP() const {return seedP;}
-
-	;
+  double getMaxRatio() const {
+	  return maxratio;
+  }
+  /**
+   * \brief This function will return seeds used in SA
+   * \return seed array of unsigned int with the seeds used in SA
+   */
+  unsigned* getSeed() const {return seed;};
 
 
 private:
@@ -206,8 +217,6 @@
    * \brief This is the flag used to denote whether the current simulation has been started using paramin (PVM) or not
    */
   int runnetwork;
-  //FIXME doc
-  int runomp;
   /**
    * \brief This is the flag used to denote whether the current simulation should print model output or not
    */
@@ -232,13 +241,16 @@
    * \brief This is the maximum ratio of a stock that can be consumed on any given timestep
    */
   double maxratio;
-
-  //FIXME doc
-  //see[0] = seed; see[1] = seedM; see[2] = seedP;
+  /**
+   * \brief vector with the seeds used in SA
+   * \note see[0] = seed | see[1] = seedM | see[2] = seedP
+   */
   unsigned* seed;
-//  unsigned seed = 0;
-//  unsigned seedM = 0;
-//  unsigned seedP = 0;
+#ifdef _OPENMP
+  /**
+   * \brief This is the flag used to denote whether the likelihood score should be optimised in pararrel   */
+  int runparallel;
+#endif
 };
 
 #endif