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#ifndef growthcalc_h
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#define growthcalc_h
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#include "areatime.h" |
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#include "conversionindex.h" |
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#include "formulamatrixptrvector.h" |
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#include "commentstream.h" |
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#include "popinfovector.h" |
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#include "livesonareas.h" |
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#include "modelvariablevector.h" |
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#include "keeper.h" |
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ulcessvp |
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#include "matrix.h" |
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agomez |
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/**
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* \class GrowthCalcBase
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* \brief This is the base class used to calculate the growth of a stock within the model
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* \note This will always be overridden by the derived classes that actually calculate the growth
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*/
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class GrowthCalcBase : protected LivesOnAreas {
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public:
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/**
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* \brief This is the default GrowthCalcBase constructor
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* \param Areas is the IntVector of areas that the growth calculation can take place on
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*/
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GrowthCalcBase(const IntVector& Areas);
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/**
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* \brief This is the default GrowthCalcBase destructor
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*/
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~GrowthCalcBase() {};
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/**
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* \brief This is the function that calculates the growth
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* \param area is the area that the growth is being calculated on
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ulcessvp |
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* \param Lgrowth is the Matrix of doubles of the mean length increase for each length group of the stock
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* \param Wgrowth is the Matrix of doubles of the mean weight increase for each length group of the stock
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* \param numGrow is the PopInfoVector of the current population of the stock
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* \param Area is the AreaClass for the current model
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* \param TimeInfo is the TimeClass for the current model
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* \param Fphi is the DoubleVector of the feeding level of the stock
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* \param MaxCon is the DoubleVector of the maximum consumption of the stock
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* \param LgrpDiv is the LengthGroupDivision of the stock
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ulcessvp |
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* \param size is the number of columns of the Matrix
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* \note This will be overridden by the derived classes that actually calculate the growth
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*/
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ulcessvp |
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virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
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const PopInfoVector& numGrow, const AreaClass* const Area,
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const TimeClass* const TimeInfo, const DoubleVector& Fphi,
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const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size) = 0;
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/**
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* \brief This will return the power term of the length - weight relationship
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* \return 0 (will be overridden in derived classes)
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*/
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virtual double getPower() { return 0.0; };
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/**
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* \brief This will return the multiplier of the length - weight relationship
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* \return 0 (will be overridden in derived classes)
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*/
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virtual double getMult() { return 0.0; };
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};
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/**
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* \class GrowthCalcA
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* \brief This is the class used to calculate the growth of a stock using the MULTSPEC growth function
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*/
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class GrowthCalcA : public GrowthCalcBase {
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public:
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/**
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* \brief This is the default GrowthCalcA constructor
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* \param infile is the CommentStream to read the growth parameters from
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* \param Areas is the IntVector of areas that the growth calculation can take place on
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* \param TimeInfo is the TimeClass for the current model
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* \param keeper is the Keeper for the current model
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*/
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GrowthCalcA(CommentStream& infile, const IntVector& Areas,
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const TimeClass* const TimeInfo, Keeper* const keeper);
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/**
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* \brief This is the default GrowthCalcA destructor
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*/
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~GrowthCalcA() {};
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/**
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* \brief This is the function that calculates the growth using the MULTSPEC function
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* \param area is the area that the growth is being calculated on
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* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
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* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
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* \param numGrow is the PopInfoVector of the current population of the stock
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* \param Area is the AreaClass for the current model
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* \param TimeInfo is the TimeClass for the current model
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* \param Fphi is the DoubleVector of the feeding level of the stock
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* \param MaxCon is the DoubleVector of the maximum consumption of the stock
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* \param LgrpDiv is the LengthGroupDivision of the stock
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*/
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ulcessvp |
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// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
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// const PopInfoVector& numGrow, const AreaClass* const Area,
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// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
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// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
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ulcessvp |
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virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
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const PopInfoVector& numGrow, const AreaClass* const Area,
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const TimeClass* const TimeInfo, const DoubleVector& Fphi,
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ulcessvp |
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const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
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protected:
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/**
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* \brief This is the number of growth parameters (set to 9)
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*/
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int numGrowthConstants;
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/**
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* \brief This is the ModelVariableVector of growth parameters
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*/
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ModelVariableVector growthPar;
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};
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/**
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* \class GrowthCalcB
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* \brief This is the class used to calculate the growth when reading the growth directly from a file
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*/
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class GrowthCalcB : public GrowthCalcBase {
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public:
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/**
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* \brief This is the default GrowthCalcB constructor
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* \param infile is the CommentStream to read the growth parameters from
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* \param Areas is the IntVector of areas that the growth calculation can take place on
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* \param TimeInfo is the TimeClass for the current model
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* \param keeper is the Keeper for the current model
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* \param Area is the AreaClass for the current model
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* \param lenindex is the CharPtrVector of the lengths used for the growth of the stock
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*/
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GrowthCalcB(CommentStream& infile, const IntVector& Areas, const TimeClass* const TimeInfo,
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Keeper* const keeper, const AreaClass* const Area, const CharPtrVector& lenindex);
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/**
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* \brief This is the default GrowthCalcB destructor
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*/
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~GrowthCalcB();
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/**
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* \brief This is the function that calculates the growth read from file
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* \param area is the area that the growth is being calculated on
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* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
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* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
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* \param numGrow is the PopInfoVector of the current population of the stock
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* \param Area is the AreaClass for the current model
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* \param TimeInfo is the TimeClass for the current model
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* \param Fphi is the DoubleVector of the feeding level of the stock
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* \param MaxCon is the DoubleVector of the maximum consumption of the stock
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* \param LgrpDiv is the LengthGroupDivision of the stock
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*/
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ulcessvp |
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// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
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// const PopInfoVector& numGrow, const AreaClass* const Area,
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// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
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// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
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ulcessvp |
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virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
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const PopInfoVector& numGrow, const AreaClass* const Area,
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const TimeClass* const TimeInfo, const DoubleVector& Fphi,
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const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
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protected:
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/**
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* \brief This is the FormulaMatrixPtrVector of increase in length for each length group
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*/
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FormulaMatrixPtrVector lgrowth;
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/**
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* \brief This is the FormulaMatrixPtrVector of increase in weight for each length group
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*/
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FormulaMatrixPtrVector wgrowth;
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};
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/**
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* \class GrowthCalcC
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* \brief This is the class used to calculate the growth of a stock using a weight-based Von Bertalanffy growth function
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*/
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class GrowthCalcC : public GrowthCalcBase {
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public:
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/**
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* \brief This is the default GrowthCalcC constructor
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* \param infile is the CommentStream to read the growth parameters from
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* \param Areas is the IntVector of areas that the growth calculation can take place on
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* \param TimeInfo is the TimeClass for the current model
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* \param LgrpDiv is the LengthGroupDivision of the stock
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* \param keeper is the Keeper for the current model
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* \param refWeightFile is the name of the file containing the reference weight information for the stock
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*/
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GrowthCalcC(CommentStream& infile, const IntVector& Areas, const TimeClass* const TimeInfo,
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const LengthGroupDivision* const LgrpDiv, Keeper* const keeper, const char* refWeightFile);
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/**
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* \brief This is the default GrowthCalcC destructor
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*/
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~GrowthCalcC() {};
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/**
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* \brief This is the function that calculates the growth using a weight-based Von Bertalanffy function
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* \param area is the area that the growth is being calculated on
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* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
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* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
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* \param numGrow is the PopInfoVector of the current population of the stock
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* \param Area is the AreaClass for the current model
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* \param TimeInfo is the TimeClass for the current model
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* \param Fphi is the DoubleVector of the feeding level of the stock
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* \param MaxCon is the DoubleVector of the maximum consumption of the stock
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* \param LgrpDiv is the LengthGroupDivision of the stock
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*/
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ulcessvp |
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// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
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// const PopInfoVector& numGrow, const AreaClass* const Area,
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// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
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// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
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ulcessvp |
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virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
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const PopInfoVector& numGrow, const AreaClass* const Area,
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const TimeClass* const TimeInfo, const DoubleVector& Fphi,
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ulcessvp |
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const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
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agomez |
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/**
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* \brief This will return the power term of the length - weight relationship
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* \return lgrowthPar[7]
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*/
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virtual double getPower() { return lgrowthPar[7]; };
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/**
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* \brief This will return the multiplier of the length - weight relationship
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* \return lgrowthPar[6]
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*/
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virtual double getMult() { return lgrowthPar[6]; };
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protected:
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/**
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* \brief This is the number of weight growth parameters (set to 6)
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*/
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int numWeightGrowthConstants;
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/**
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* \brief This is the number of length growth parameters (set to 9)
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*/
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int numLengthGrowthConstants;
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/**
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* \brief This is the ModelVariableVector of weight growth parameters
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*/
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ModelVariableVector wgrowthPar;
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/**
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* \brief This is the ModelVariableVector of length growth parameters
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*/
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ModelVariableVector lgrowthPar;
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/**
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* \brief This is the DoubleVector of the reference weight values
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*/
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DoubleVector refWeight;
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};
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/**
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* \class GrowthCalcD
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* \brief This is the class used to calculate the growth of a stock using the Jones growth function
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*/
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class GrowthCalcD : public GrowthCalcBase {
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public:
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/**
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* \brief This is the default GrowthCalcD constructor
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* \param infile is the CommentStream to read the growth parameters from
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* \param Areas is the IntVector of areas that the growth calculation can take place on
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* \param TimeInfo is the TimeClass for the current model
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* \param LgrpDiv is the LengthGroupDivision of the stock
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* \param keeper is the Keeper for the current model
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* \param refWeightFile is the name of the file containing the reference weight information for the stock
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*/
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GrowthCalcD(CommentStream& infile, const IntVector& Areas, const TimeClass* const TimeInfo,
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const LengthGroupDivision* const LgrpDiv, Keeper* const keeper, const char* refWeightFile);
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/**
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* \brief This is the default GrowthCalcD destructor
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*/
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~GrowthCalcD() {};
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| 260 : |
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/**
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* \brief This is the function that calculates the growth using the Jones growth function
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| 262 : |
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* \param area is the area that the growth is being calculated on
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| 263 : |
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* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
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| 264 : |
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* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
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| 265 : |
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* \param numGrow is PopInfoVector of the the current population of the stock
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* \param Area is the AreaClass for the current model
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| 267 : |
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* \param TimeInfo is the TimeClass for the current model
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| 268 : |
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* \param Fphi is the DoubleVector of the feeding level of the stock
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| 269 : |
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* \param MaxCon is the DoubleVector of the maximum consumption of the stock
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| 270 : |
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* \param LgrpDiv is the LengthGroupDivision of the stock
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| 271 : |
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*/
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| 272 : |
ulcessvp |
4 |
// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
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// const PopInfoVector& numGrow, const AreaClass* const Area,
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// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
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// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
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ulcessvp |
2 |
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virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
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const PopInfoVector& numGrow, const AreaClass* const Area,
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const TimeClass* const TimeInfo, const DoubleVector& Fphi,
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| 280 : |
ulcessvp |
4 |
const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
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| 281 : |
agomez |
1 |
/**
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* \brief This will return the power term of the length - weight relationship
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* \return lgrowthPar[7]
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*/
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virtual double getPower() { return lgrowthPar[7]; };
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/**
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* \brief This will return the multiplier of the length - weight relationship
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| 288 : |
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* \return lgrowthPar[6]
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*/
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virtual double getMult() { return lgrowthPar[6]; };
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| 291 : |
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protected:
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| 292 : |
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/**
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| 293 : |
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* \brief This is the number of weight growth parameters (set to 6)
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| 294 : |
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*/
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| 295 : |
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int numWeightGrowthConstants;
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| 296 : |
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/**
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* \brief This is the number of length growth parameters (set to 9)
|
| 298 : |
|
|
*/
|
| 299 : |
|
|
int numLengthGrowthConstants;
|
| 300 : |
|
|
/**
|
| 301 : |
|
|
* \brief This is the ModelVariableVector of weight growth parameters
|
| 302 : |
|
|
*/
|
| 303 : |
|
|
ModelVariableVector wgrowthPar;
|
| 304 : |
|
|
/**
|
| 305 : |
|
|
* \brief This is the ModelVariableVector of length growth parameters
|
| 306 : |
|
|
*/
|
| 307 : |
|
|
ModelVariableVector lgrowthPar;
|
| 308 : |
|
|
/**
|
| 309 : |
|
|
* \brief This is the DoubleVector of the reference weight values
|
| 310 : |
|
|
*/
|
| 311 : |
|
|
DoubleVector refWeight;
|
| 312 : |
|
|
};
|
| 313 : |
|
|
|
| 314 : |
|
|
/**
|
| 315 : |
|
|
* \class GrowthCalcE
|
| 316 : |
|
|
* \brief This is the class used to calculate the growth of a stock using an extended form of the Von Bertalanffy function
|
| 317 : |
|
|
*/
|
| 318 : |
|
|
class GrowthCalcE : public GrowthCalcBase {
|
| 319 : |
|
|
public:
|
| 320 : |
|
|
/**
|
| 321 : |
|
|
* \brief This is the default GrowthCalcE constructor
|
| 322 : |
|
|
* \param infile is the CommentStream to read the growth parameters from
|
| 323 : |
|
|
* \param Areas is the IntVector of areas that the growth calculation can take place on
|
| 324 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 325 : |
|
|
* \param LgrpDiv is the LengthGroupDivision of the stock
|
| 326 : |
|
|
* \param keeper is the Keeper for the current model
|
| 327 : |
|
|
* \param refWeightFile is the name of the file containing the reference weight information for the stock
|
| 328 : |
|
|
*/
|
| 329 : |
|
|
GrowthCalcE(CommentStream& infile, const IntVector& Areas, const TimeClass* const TimeInfo,
|
| 330 : |
|
|
const LengthGroupDivision* const LgrpDiv, Keeper* const keeper, const char* refWeightFile);
|
| 331 : |
|
|
/**
|
| 332 : |
|
|
* \brief This is the default GrowthCalcE destructor
|
| 333 : |
|
|
*/
|
| 334 : |
|
|
~GrowthCalcE() {};
|
| 335 : |
|
|
/**
|
| 336 : |
|
|
* \brief This is the function that calculates the growth using an extended Von Bertalanffy growth function
|
| 337 : |
|
|
* \param area is the area that the growth is being calculated on
|
| 338 : |
|
|
* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
|
| 339 : |
|
|
* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
|
| 340 : |
|
|
* \param numGrow is the PopInfoVector of the current population of the stock
|
| 341 : |
|
|
* \param Area is the AreaClass for the current model
|
| 342 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 343 : |
|
|
* \param Fphi is the DoubleVector of the feeding level of the stock
|
| 344 : |
|
|
* \param MaxCon is the DoubleVector of the maximum consumption of the stock
|
| 345 : |
|
|
* \param LgrpDiv is the LengthGroupDivision of the stock
|
| 346 : |
|
|
*/
|
| 347 : |
ulcessvp |
4 |
// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
|
| 348 : |
|
|
// const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 349 : |
|
|
// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 350 : |
|
|
// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
|
| 351 : |
ulcessvp |
2 |
|
| 352 : |
|
|
virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
|
| 353 : |
|
|
const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 354 : |
|
|
const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 355 : |
ulcessvp |
4 |
const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
|
| 356 : |
agomez |
1 |
/**
|
| 357 : |
|
|
* \brief This will return the power term of the length - weight relationship
|
| 358 : |
|
|
* \return lgrowthPar[7]
|
| 359 : |
|
|
*/
|
| 360 : |
|
|
virtual double getPower() { return lgrowthPar[7]; };
|
| 361 : |
|
|
/**
|
| 362 : |
|
|
* \brief This will return the multiplier of the length - weight relationship
|
| 363 : |
|
|
* \return lgrowthPar[6]
|
| 364 : |
|
|
*/
|
| 365 : |
|
|
virtual double getMult() { return lgrowthPar[6]; };
|
| 366 : |
|
|
protected:
|
| 367 : |
|
|
/**
|
| 368 : |
|
|
* \brief This is the number of weight growth parameters (set to 6)
|
| 369 : |
|
|
*/
|
| 370 : |
|
|
int numWeightGrowthConstants;
|
| 371 : |
|
|
/**
|
| 372 : |
|
|
* \brief This is the number of length growth parameters (set to 9)
|
| 373 : |
|
|
*/
|
| 374 : |
|
|
int numLengthGrowthConstants;
|
| 375 : |
|
|
/**
|
| 376 : |
|
|
* \brief This is the ModelVariableVector of weight growth parameters
|
| 377 : |
|
|
*/
|
| 378 : |
|
|
ModelVariableVector wgrowthPar;
|
| 379 : |
|
|
/**
|
| 380 : |
|
|
* \brief This is the ModelVariableVector of length growth parameters
|
| 381 : |
|
|
*/
|
| 382 : |
|
|
ModelVariableVector lgrowthPar;
|
| 383 : |
|
|
/**
|
| 384 : |
|
|
* \brief This is the DoubleVector of the reference weight values
|
| 385 : |
|
|
*/
|
| 386 : |
|
|
DoubleVector refWeight;
|
| 387 : |
|
|
/**
|
| 388 : |
|
|
* \brief This is the FormulaVector of parameters for the year effect
|
| 389 : |
|
|
*/
|
| 390 : |
|
|
FormulaVector yearEffect;
|
| 391 : |
|
|
/**
|
| 392 : |
|
|
* \brief This is the FormulaVector of parameters for the step effect
|
| 393 : |
|
|
*/
|
| 394 : |
|
|
FormulaVector stepEffect;
|
| 395 : |
|
|
/**
|
| 396 : |
|
|
* \brief This is the FormulaVector of parameters for the area effect
|
| 397 : |
|
|
*/
|
| 398 : |
|
|
FormulaVector areaEffect;
|
| 399 : |
|
|
};
|
| 400 : |
|
|
|
| 401 : |
|
|
/**
|
| 402 : |
|
|
* \class GrowthCalcF
|
| 403 : |
|
|
* \brief This is the class used to calculate the growth of a stock using a length based Von Bertalanffy growth function
|
| 404 : |
|
|
*/
|
| 405 : |
|
|
class GrowthCalcF : public GrowthCalcBase {
|
| 406 : |
|
|
public:
|
| 407 : |
|
|
/**
|
| 408 : |
|
|
* \brief This is the default GrowthCalcF constructor
|
| 409 : |
|
|
* \param infile is the CommentStream to read the growth parameters from
|
| 410 : |
|
|
* \param Areas is the IntVector of areas that the growth calculation can take place on
|
| 411 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 412 : |
|
|
* \param keeper is the Keeper for the current model
|
| 413 : |
|
|
* \param Area is the AreaClass for the current model
|
| 414 : |
|
|
* \param lenindex is the CharPtrVector of the lengths used for the growth of the stock
|
| 415 : |
|
|
*/
|
| 416 : |
|
|
GrowthCalcF(CommentStream& infile, const IntVector& Areas, const TimeClass* const TimeInfo,
|
| 417 : |
|
|
Keeper* const keeper, const AreaClass* const Area, const CharPtrVector& lenindex);
|
| 418 : |
|
|
/**
|
| 419 : |
|
|
* \brief This is the default GrowthCalcF destructor
|
| 420 : |
|
|
*/
|
| 421 : |
|
|
~GrowthCalcF();
|
| 422 : |
|
|
/**
|
| 423 : |
|
|
* \brief This is the function that calculates the growth using a length based Von Bertalanffy growth function
|
| 424 : |
|
|
* \param area is the area that the growth is being calculated on
|
| 425 : |
|
|
* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
|
| 426 : |
|
|
* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
|
| 427 : |
|
|
* \param numGrow is the PopInfoVector of the current population of the stock
|
| 428 : |
|
|
* \param Area is the AreaClass for the current model
|
| 429 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 430 : |
|
|
* \param Fphi is the DoubleVector of the feeding level of the stock
|
| 431 : |
|
|
* \param MaxCon is the DoubleVector of the maximum consumption of the stock
|
| 432 : |
|
|
* \param LgrpDiv is the LengthGroupDivision of the stock
|
| 433 : |
|
|
*/
|
| 434 : |
ulcessvp |
4 |
// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
|
| 435 : |
|
|
// const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 436 : |
|
|
// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 437 : |
|
|
// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
|
| 438 : |
ulcessvp |
2 |
|
| 439 : |
|
|
virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
|
| 440 : |
|
|
const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 441 : |
|
|
const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 442 : |
ulcessvp |
4 |
const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
|
| 443 : |
agomez |
1 |
protected:
|
| 444 : |
|
|
/**
|
| 445 : |
|
|
* \brief This is the number of growth parameters (set to 2)
|
| 446 : |
|
|
*/
|
| 447 : |
|
|
int numGrowthConstants;
|
| 448 : |
|
|
/**
|
| 449 : |
|
|
* \brief This is the ModelVariableVector of growth parameters
|
| 450 : |
|
|
*/
|
| 451 : |
|
|
ModelVariableVector growthPar;
|
| 452 : |
|
|
/**
|
| 453 : |
|
|
* \brief This is the FormulaMatrixPtrVector of increase in weight for each length group
|
| 454 : |
|
|
*/
|
| 455 : |
|
|
FormulaMatrixPtrVector wgrowth;
|
| 456 : |
|
|
};
|
| 457 : |
|
|
|
| 458 : |
|
|
/**
|
| 459 : |
|
|
* \class GrowthCalcG
|
| 460 : |
|
|
* \brief This is the class used to calculate the growth of a stock using a power growth function
|
| 461 : |
|
|
*/
|
| 462 : |
|
|
class GrowthCalcG : public GrowthCalcBase {
|
| 463 : |
|
|
public:
|
| 464 : |
|
|
/**
|
| 465 : |
|
|
* \brief This is the default GrowthCalcG constructor
|
| 466 : |
|
|
* \param infile is the CommentStream to read the growth parameters from
|
| 467 : |
|
|
* \param Areas is the IntVector of areas that the growth calculation can take place on
|
| 468 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 469 : |
|
|
* \param keeper is the Keeper for the current model
|
| 470 : |
|
|
* \param Area is the AreaClass for the current model
|
| 471 : |
|
|
* \param lenindex is the CharPtrVector of the lengths used for the growth of the stock
|
| 472 : |
|
|
*/
|
| 473 : |
|
|
GrowthCalcG(CommentStream& infile, const IntVector& Areas, const TimeClass* const TimeInfo,
|
| 474 : |
|
|
Keeper* const keeper, const AreaClass* const Area, const CharPtrVector& lenindex);
|
| 475 : |
|
|
/**
|
| 476 : |
|
|
* \brief This is the default GrowthCalcG destructor
|
| 477 : |
|
|
*/
|
| 478 : |
|
|
~GrowthCalcG();
|
| 479 : |
|
|
/**
|
| 480 : |
|
|
* \brief This is the function that calculates the growth using a power growth function
|
| 481 : |
|
|
* \param area is the area that the growth is being calculated on
|
| 482 : |
|
|
* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
|
| 483 : |
|
|
* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
|
| 484 : |
|
|
* \param numGrow is PopInfoVector of the the current population of the stock
|
| 485 : |
|
|
* \param Area is the AreaClass for the current model
|
| 486 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 487 : |
|
|
* \param Fphi is the DoubleVector of the feeding level of the stock
|
| 488 : |
|
|
* \param MaxCon is the DoubleVector of the maximum consumption of the stock
|
| 489 : |
|
|
* \param LgrpDiv is the LengthGroupDivision of the stock
|
| 490 : |
|
|
*/
|
| 491 : |
ulcessvp |
4 |
// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
|
| 492 : |
|
|
// const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 493 : |
|
|
// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 494 : |
|
|
// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
|
| 495 : |
ulcessvp |
2 |
|
| 496 : |
|
|
virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
|
| 497 : |
|
|
const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 498 : |
|
|
const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 499 : |
ulcessvp |
4 |
const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
|
| 500 : |
agomez |
1 |
protected:
|
| 501 : |
|
|
/**
|
| 502 : |
|
|
* \brief This is the number of growth parameters (set to 2)
|
| 503 : |
|
|
*/
|
| 504 : |
|
|
int numGrowthConstants;
|
| 505 : |
|
|
/**
|
| 506 : |
|
|
* \brief This is the ModelVariableVector of growth parameters
|
| 507 : |
|
|
*/
|
| 508 : |
|
|
ModelVariableVector growthPar;
|
| 509 : |
|
|
/**
|
| 510 : |
|
|
* \brief This is the FormulaMatrixPtrVector of increase in weight for each length group
|
| 511 : |
|
|
*/
|
| 512 : |
|
|
FormulaMatrixPtrVector wgrowth;
|
| 513 : |
|
|
};
|
| 514 : |
|
|
|
| 515 : |
|
|
/**
|
| 516 : |
|
|
* \class GrowthCalcH
|
| 517 : |
|
|
* \brief This is the class used to calculate the growth of a stock using a simple length based Von Bertalanffy growth function
|
| 518 : |
|
|
*/
|
| 519 : |
|
|
class GrowthCalcH : public GrowthCalcBase {
|
| 520 : |
|
|
public:
|
| 521 : |
|
|
/**
|
| 522 : |
|
|
* \brief This is the default GrowthCalcH constructor
|
| 523 : |
|
|
* \param infile is the CommentStream to read the growth parameters from
|
| 524 : |
|
|
* \param Areas is the IntVector of areas that the growth calculation can take place on
|
| 525 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 526 : |
|
|
* \param keeper is the Keeper for the current model
|
| 527 : |
|
|
*/
|
| 528 : |
|
|
GrowthCalcH(CommentStream& infile, const IntVector& Areas,
|
| 529 : |
|
|
const TimeClass* const TimeInfo, Keeper* const keeper);
|
| 530 : |
|
|
/**
|
| 531 : |
|
|
* \brief This is the default GrowthCalcH destructor
|
| 532 : |
|
|
*/
|
| 533 : |
|
|
~GrowthCalcH() {};
|
| 534 : |
|
|
/**
|
| 535 : |
|
|
* \brief This is the function that calculates the growth using a simple length based Von Bertalanffy growth function
|
| 536 : |
|
|
* \param area is the area that the growth is being calculated on
|
| 537 : |
|
|
* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
|
| 538 : |
|
|
* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
|
| 539 : |
|
|
* \param numGrow is the PopInfoVector of the current population of the stock
|
| 540 : |
|
|
* \param Area is the AreaClass for the current model
|
| 541 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 542 : |
|
|
* \param Fphi is the DoubleVector of the feeding level of the stock
|
| 543 : |
|
|
* \param MaxCon is the DoubleVector of the maximum consumption of the stock
|
| 544 : |
|
|
* \param LgrpDiv is the LengthGroupDivision of the stock
|
| 545 : |
|
|
*/
|
| 546 : |
ulcessvp |
4 |
// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
|
| 547 : |
|
|
// const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 548 : |
|
|
// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 549 : |
|
|
// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
|
| 550 : |
ulcessvp |
2 |
|
| 551 : |
|
|
|
| 552 : |
|
|
virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
|
| 553 : |
|
|
const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 554 : |
|
|
const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 555 : |
|
|
const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
|
| 556 : |
|
|
|
| 557 : |
agomez |
1 |
/**
|
| 558 : |
|
|
* \brief This will return the power term of the length - weight relationship
|
| 559 : |
|
|
* \return growthPar[3]
|
| 560 : |
|
|
*/
|
| 561 : |
|
|
virtual double getPower() { return growthPar[3]; };
|
| 562 : |
|
|
/**
|
| 563 : |
|
|
* \brief This will return the multiplier of the length - weight relationship
|
| 564 : |
|
|
* \return growthPar[2]
|
| 565 : |
|
|
*/
|
| 566 : |
|
|
virtual double getMult() { return growthPar[2]; };
|
| 567 : |
|
|
protected:
|
| 568 : |
|
|
/**
|
| 569 : |
|
|
* \brief This is the number of growth parameters (set to 4)
|
| 570 : |
|
|
*/
|
| 571 : |
|
|
int numGrowthConstants;
|
| 572 : |
|
|
/**
|
| 573 : |
|
|
* \brief This is the ModelVariableVector of growth parameters
|
| 574 : |
|
|
*/
|
| 575 : |
|
|
ModelVariableVector growthPar;
|
| 576 : |
|
|
};
|
| 577 : |
|
|
|
| 578 : |
|
|
/**
|
| 579 : |
|
|
* \class GrowthCalcI
|
| 580 : |
|
|
* \brief This is the class used to calculate the growth of a stock using a simple Jones growth function
|
| 581 : |
|
|
*/
|
| 582 : |
|
|
class GrowthCalcI : public GrowthCalcBase {
|
| 583 : |
|
|
public:
|
| 584 : |
|
|
/**
|
| 585 : |
|
|
* \brief This is the default GrowthCalcI constructor
|
| 586 : |
|
|
* \param infile is the CommentStream to read the growth parameters from
|
| 587 : |
|
|
* \param Areas is the IntVector of areas that the growth calculation can take place on
|
| 588 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 589 : |
|
|
* \param keeper is the Keeper for the current model
|
| 590 : |
|
|
*/
|
| 591 : |
|
|
GrowthCalcI(CommentStream& infile, const IntVector& Areas,
|
| 592 : |
|
|
const TimeClass* const TimeInfo, Keeper* const keeper);
|
| 593 : |
|
|
/**
|
| 594 : |
|
|
* \brief This is the default GrowthCalcI destructor
|
| 595 : |
|
|
*/
|
| 596 : |
|
|
~GrowthCalcI() {};
|
| 597 : |
|
|
/**
|
| 598 : |
|
|
* \brief This is the function that calculates the growth using a simple Jones growth function
|
| 599 : |
|
|
* \param area is the area that the growth is being calculated on
|
| 600 : |
|
|
* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
|
| 601 : |
|
|
* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
|
| 602 : |
|
|
* \param numGrow is the PopInfoVector of the current population of the stock
|
| 603 : |
|
|
* \param Area is the AreaClass for the current model
|
| 604 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 605 : |
|
|
* \param Fphi is the DoubleVector of the feeding level of the stock
|
| 606 : |
|
|
* \param MaxCon is the DoubleVector of the maximum consumption of the stock
|
| 607 : |
|
|
* \param LgrpDiv is the LengthGroupDivision of the stock
|
| 608 : |
|
|
*/
|
| 609 : |
ulcessvp |
4 |
// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
|
| 610 : |
|
|
// const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 611 : |
|
|
// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 612 : |
|
|
// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
|
| 613 : |
ulcessvp |
2 |
|
| 614 : |
|
|
virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
|
| 615 : |
|
|
const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 616 : |
|
|
const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 617 : |
ulcessvp |
4 |
const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
|
| 618 : |
agomez |
1 |
/**
|
| 619 : |
|
|
* \brief This will return the power term of the length - weight relationship
|
| 620 : |
|
|
* \return growthPar[4]
|
| 621 : |
|
|
*/
|
| 622 : |
|
|
virtual double getPower() { return growthPar[4]; };
|
| 623 : |
|
|
/**
|
| 624 : |
|
|
* \brief This will return the multiplier of the length - weight relationship
|
| 625 : |
|
|
* \return growthPar[5]
|
| 626 : |
|
|
*/
|
| 627 : |
|
|
virtual double getMult() { return growthPar[5]; };
|
| 628 : |
|
|
protected:
|
| 629 : |
|
|
/**
|
| 630 : |
|
|
* \brief This is the number of growth parameters (set to 6)
|
| 631 : |
|
|
*/
|
| 632 : |
|
|
int numGrowthConstants;
|
| 633 : |
|
|
/**
|
| 634 : |
|
|
* \brief This is the ModelVariableVector of growth parameters
|
| 635 : |
|
|
*/
|
| 636 : |
|
|
ModelVariableVector growthPar;
|
| 637 : |
|
|
};
|
| 638 : |
|
|
|
| 639 : |
|
|
/**
|
| 640 : |
|
|
* \class GrowthCalcJ
|
| 641 : |
|
|
* \brief This is the class used to calculate the growth of a stock using a simple length based Von Bertalanffy growth function with a non-zero value for t0
|
| 642 : |
|
|
*/
|
| 643 : |
|
|
class GrowthCalcJ : public GrowthCalcBase {
|
| 644 : |
|
|
public:
|
| 645 : |
|
|
/**
|
| 646 : |
|
|
* \brief This is the default GrowthCalcJ constructor
|
| 647 : |
|
|
* \param infile is the CommentStream to read the growth parameters from
|
| 648 : |
|
|
* \param Areas is the IntVector of areas that the growth calculation can take place on
|
| 649 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 650 : |
|
|
* \param keeper is the Keeper for the current model
|
| 651 : |
|
|
*/
|
| 652 : |
|
|
GrowthCalcJ(CommentStream& infile, const IntVector& Areas,
|
| 653 : |
|
|
const TimeClass* const TimeInfo, Keeper* const keeper);
|
| 654 : |
|
|
/**
|
| 655 : |
|
|
* \brief This is the default GrowthCalcJ destructor
|
| 656 : |
|
|
*/
|
| 657 : |
|
|
~GrowthCalcJ() {};
|
| 658 : |
|
|
/**
|
| 659 : |
|
|
* \brief This is the function that calculates the growth using a simple length based Von Bertalanffy growth function with a non-zero value for t0
|
| 660 : |
|
|
* \param area is the area that the growth is being calculated on
|
| 661 : |
|
|
* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
|
| 662 : |
|
|
* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
|
| 663 : |
|
|
* \param numGrow is the PopInfoVector of the current population of the stock
|
| 664 : |
|
|
* \param Area is the AreaClass for the current model
|
| 665 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 666 : |
|
|
* \param Fphi is the DoubleVector of the feeding level of the stock
|
| 667 : |
|
|
* \param MaxCon is the DoubleVector of the maximum consumption of the stock
|
| 668 : |
|
|
* \param LgrpDiv is the LengthGroupDivision of the stock
|
| 669 : |
|
|
*/
|
| 670 : |
ulcessvp |
4 |
// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
|
| 671 : |
|
|
// const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 672 : |
|
|
// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 673 : |
|
|
// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
|
| 674 : |
ulcessvp |
2 |
|
| 675 : |
|
|
|
| 676 : |
|
|
virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
|
| 677 : |
|
|
const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 678 : |
|
|
const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 679 : |
ulcessvp |
4 |
const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
|
| 680 : |
agomez |
1 |
/**
|
| 681 : |
|
|
* \brief This will return the power term of the length - weight relationship
|
| 682 : |
|
|
* \return growthPar[4]
|
| 683 : |
|
|
*/
|
| 684 : |
|
|
virtual double getPower() { return growthPar[4]; };
|
| 685 : |
|
|
/**
|
| 686 : |
|
|
* \brief This will return the multiplier of the length - weight relationship
|
| 687 : |
|
|
* \return growthPar[3]
|
| 688 : |
|
|
*/
|
| 689 : |
|
|
virtual double getMult() { return growthPar[3]; };
|
| 690 : |
|
|
protected:
|
| 691 : |
|
|
/**
|
| 692 : |
|
|
* \brief This is the number of growth parameters (set to 5)
|
| 693 : |
|
|
*/
|
| 694 : |
|
|
int numGrowthConstants;
|
| 695 : |
|
|
/**
|
| 696 : |
|
|
* \brief This is the ModelVariableVector of growth parameters
|
| 697 : |
|
|
*/
|
| 698 : |
|
|
ModelVariableVector growthPar;
|
| 699 : |
|
|
};
|
| 700 : |
|
|
|
| 701 : |
|
|
/**
|
| 702 : |
|
|
* \class GrowthCalcK
|
| 703 : |
|
|
* \brief This is the class used to calculate the growth of a stock using a simple length based Gompertz function
|
| 704 : |
|
|
*/
|
| 705 : |
|
|
class GrowthCalcK : public GrowthCalcBase {
|
| 706 : |
|
|
public:
|
| 707 : |
|
|
/**
|
| 708 : |
|
|
* \brief This is the default GrowthCalcK constructor
|
| 709 : |
|
|
* \param infile is the CommentStream to read the growth parameters from
|
| 710 : |
|
|
* \param Areas is the IntVector of areas that the growth calculation can take place on
|
| 711 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 712 : |
|
|
* \param keeper is the Keeper for the current model
|
| 713 : |
|
|
*/
|
| 714 : |
|
|
GrowthCalcK(CommentStream& infile, const IntVector& Areas,
|
| 715 : |
|
|
const TimeClass* const TimeInfo, Keeper* const keeper);
|
| 716 : |
|
|
/**
|
| 717 : |
|
|
* \brief This is the default GrowthCalcK destructor
|
| 718 : |
|
|
*/
|
| 719 : |
|
|
~GrowthCalcK() {};
|
| 720 : |
|
|
/**
|
| 721 : |
|
|
* \brief This is the function that calculates the growth using a simple length based Gompertz function
|
| 722 : |
|
|
* \param area is the area that the growth is being calculated on
|
| 723 : |
|
|
* \param Lgrowth is the DoubleVector of the mean length increase for each length group of the stock
|
| 724 : |
|
|
* \param Wgrowth is the DoubleVector of the mean weight increase for each length group of the stock
|
| 725 : |
|
|
* \param numGrow is the PopInfoVector of the current population of the stock
|
| 726 : |
|
|
* \param Area is the AreaClass for the current model
|
| 727 : |
|
|
* \param TimeInfo is the TimeClass for the current model
|
| 728 : |
|
|
* \param Fphi is the DoubleVector of the feeding level of the stock
|
| 729 : |
|
|
* \param MaxCon is the DoubleVector of the maximum consumption of the stock
|
| 730 : |
|
|
* \param LgrpDiv is the LengthGroupDivision of the stock
|
| 731 : |
|
|
*/
|
| 732 : |
ulcessvp |
4 |
// virtual void calcGrowth(int area, DoubleVector& Lgrowth, DoubleVector& Wgrowth,
|
| 733 : |
|
|
// const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 734 : |
|
|
// const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 735 : |
|
|
// const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv);
|
| 736 : |
ulcessvp |
2 |
|
| 737 : |
|
|
virtual void calcGrowth(int area, double* Lgrowth, double* Wgrowth,
|
| 738 : |
|
|
const PopInfoVector& numGrow, const AreaClass* const Area,
|
| 739 : |
|
|
const TimeClass* const TimeInfo, const DoubleVector& Fphi,
|
| 740 : |
ulcessvp |
4 |
const DoubleVector& MaxCon, const LengthGroupDivision* const LgrpDiv, int size);
|
| 741 : |
agomez |
1 |
/**
|
| 742 : |
|
|
* \brief This will return the power term of the length - weight relationship
|
| 743 : |
|
|
* \return growthPar[4]
|
| 744 : |
|
|
*/
|
| 745 : |
|
|
virtual double getPower() { return growthPar[4]; };
|
| 746 : |
|
|
/**
|
| 747 : |
|
|
* \brief This will return the multiplier of the length - weight relationship
|
| 748 : |
|
|
* \return growthPar[3]
|
| 749 : |
|
|
*/
|
| 750 : |
|
|
virtual double getMult() { return growthPar[3]; };
|
| 751 : |
|
|
protected:
|
| 752 : |
|
|
/**
|
| 753 : |
|
|
* \brief This is the number of growth parameters (set to 5)
|
| 754 : |
|
|
*/
|
| 755 : |
|
|
int numGrowthConstants;
|
| 756 : |
|
|
/**
|
| 757 : |
|
|
* \brief This is the ModelVariableVector of growth parameters
|
| 758 : |
|
|
*/
|
| 759 : |
|
|
ModelVariableVector growthPar;
|
| 760 : |
|
|
};
|
| 761 : |
|
|
|
| 762 : |
|
|
#endif
|
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