--- trunk/gadget/ecosystem.h	2015/06/10 13:01:42	10
+++ trunk/gadget/ecosystem.h	2015/07/23 19:00:38	11
@@ -82,7 +82,7 @@
    * \brief This function will read in the optimisation parameters from the input file
    * \param infile is the CommentStream to read the optimisation parameters from
    */
-  void readOptimisation(CommentStream& infile);
+  void readOptimisation(CommentStream& infile, unsigned* seed);
   /**
    * \brief This function will write the current model status to file
    * \param filename is the name of the file to write the model information to
@@ -111,10 +111,16 @@
    * \brief This function will display information about the optimised values of the parameters
    */
   void writeOptValues();
+  //FIXME doc
+//#ifdef GADGET_OPENMP
+//  void writeOptValuesOMP();
+//#endif
   /**
    * \brief This is the function that will optimise the likelihood score
    */
   void Optimise();
+  //FIXME doc
+  void OptimiseOMP();
   /**
    * \brief This function will initialise the Ecosystem parameters
    */
@@ -124,6 +130,8 @@
    * \param Stochastic is the StochasticData containing the new values of the parameters
    */
   void Update(const StochasticData* const Stochastic) const { keeper->Update(Stochastic); };
+  //FIXME doc
+  void Update(const DoubleVector v)const { keeper->Update(v);}
   /**
    * \brief This function will reset the Ecosystem information
    */
@@ -260,6 +268,8 @@
   /**
    * \brief This is the flag used to denote whether the user has interrupted the current model run
    */
+  //FIXME doc
+  DoubleVector getValues() {return keeper->getValues();}
   volatile int interrupted;
 protected:
   /**