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agomez |
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##########################################################################
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# Common for all architecture and compiler options
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##########################################################################
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GCCWARNINGS = -Wimplicit -Wreturn-type -Wswitch -Wcomment -Wformat \
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-Wparentheses -Wpointer-arith -Wcast-qual -Wconversion \
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-Wreorder -Wwrite-strings -Wsynth -Wchar-subscripts \
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ulcessvp |
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-Wuninitialized -W -pedantic
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agomez |
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ulcessvp |
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#DEFINE_FLAGS = -D DEBUG -D INTERRUPT_HANDLER -g -O3
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ulcessvp |
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DEFINE_FLAGS = -D NDEBUG -O3#-D INTERRUPT_HANDLER -O3
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ulcessvp |
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#DEFINE_FLAGS = -D NDEBUG -D INTERRUPT_HANDLER -O3 -pg
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agomez |
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#-s
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##########################################################################
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# The name of the final executable (eg gadget-paramin or gadget.exe)
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#GADGET = gadget-paramin
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ulcessvp |
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GADGET = gadget
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#GADGET = gadget-ompRepro
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ulcessvp |
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#GADGET = gadget-ompSpec
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agomez |
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##########################################################################
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# Pick the appropriate compiler from the following switches
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##########################################################################
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# 1. Linux, or Cygwin, or Solaris, with MPI, mpic++ compiler
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#CXX = mpic++
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#LIBDIRS = -L. -L/usr/local/lib
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#LIBRARIES = -lm
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#CXXFLAGS = $(GCCWARNINGS) $(DEFINE_FLAGS) -D GADGET_NETWORK
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#OBJECTS = $(GADGETINPUT) $(GADGETOBJECTS) $(SLAVEOBJECTS)
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##########################################################################
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ulcessvp |
11 |
# 2. Linux, Mac, Cgwin or Solaris, without MPI, using g++ compiler - sequential
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#CXX = g++
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#LIBDIRS = -L. -L/usr/local/lib
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#LIBRARIES = -lm
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ulcessvp |
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#CXXFLAGS = $(DEFINE_FLAGS)
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ulcessvp |
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#OBJECTS = $(GADGETINPUT) $(GADGETOBJECTS)
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##########################################################################
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# 2,5. Linux, Mac, Cgwin or Solaris, without MPI, using g++ compiler and OpenMP Reproducible
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ulcessvp |
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#CXX = g++
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#LIBDIRS = -L. -L/usr/local/lib
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#LIBRARIES = -lm
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#CXXFLAGS = $(DEFINE_FLAGS) -fopenmp
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#OBJECTS = $(GADGETINPUT) $(GADGETOBJECTS)
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##########################################################################
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# 2,6. Linux, Mac, Cgwin or Solaris, without MPI, using g++ compiler and OpenMP Speculative
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agomez |
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#CXX = icpc
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#LIBDIRS = -L.
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#LIBRARIES =
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agomez |
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#CXXFLAGS = $(DEFINE_FLAGS) -cxxlib -qopenmp -mmic -DSPECULATIVE
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agomez |
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#CXXFLAGS = $(DEFINE_FLAGS) -cxxlib -qopenmp
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#OBJECTS = $(GADGETINPUT) $(GADGETOBJECTS)
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CXX = g++-6
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LIBDIRS = -L. -L/usr/local/lib
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LIBRARIES = -lm
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CXXFLAGS = $(DEFINE_FLAGS) -fopenmp
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ulcessvp |
12 |
OBJECTS = $(GADGETINPUT) $(GADGETOBJECTS)
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##########################################################################
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agomez |
1 |
# 3. Solaris, without pvm3, using CC compiler
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#CXX = CC
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#LIBDIRS = -L. -L/usr/local/lib
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#LIBRARIES = -lm
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#CXXFLAGS = $(DEFINE_FLAGS)
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#OBJECTS = $(GADGETINPUT) $(GADGETOBJECTS)
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##########################################################################
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# 4. Linux or Solaris, without pvm3, g++ compiler running CONDOR
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#CXX = condor_compile g++
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#LIBDIRS = -L. -L/usr/local/lib
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#LIBRARIES = -lm
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#CXXFLAGS = $(GCCWARNINGS) $(DEFINE_FLAGS)
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#OBJECTS = $(GADGETINPUT) $(GADGETOBJECTS)
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##########################################################################
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GADGETOBJECTS = gadget.o ecosystem.o initialize.o simulation.o fleet.o otherfood.o \
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area.o time.o keeper.o maininfo.o printinfo.o runid.o global.o stochasticdata.o \
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timevariable.o formula.o readaggregation.o readfunc.o readmain.o readword.o \
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actionattimes.o livesonareas.o lengthgroup.o conversionindex.o selectfunc.o \
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ulcessvp |
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suitfunc.o suits.o popinfomemberfunctions.o popratio.o popstatistics.o \
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agomez |
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interruptinterface.o agebandmatrix.o agebandmatrixmemberfunctions.o tags.o \
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interrupthandler.o agebandmatrixratio.o agebandmatrixratiomemberfunctions.o \
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migrationarea.o rectangle.o ludecomposition.o multinomial.o regressionline.o \
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stock.o stockmemberfunctions.o renewal.o spawner.o stray.o transition.o \
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grow.o grower.o growermemberfunctions.o growthcalc.o taggrow.o maturity.o \
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initialcond.o migration.o naturalm.o lengthprey.o prey.o stockprey.o \
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effortpredator.o lengthpredator.o linearpredator.o numberpredator.o \
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quotapredator.o predator.o poppredator.o stockpredator.o totalpredator.o \
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recaggregator.o predatorpreyaggregator.o stockpreyaggregator.o \
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predatoraggregator.o predatoroveraggregator.o preyoveraggregator.o \
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fleetpreyaggregator.o stockaggregator.o fleeteffortaggregator.o stockstdprinter.o \
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predatorprinter.o predatoroverprinter.o predatorpreyprinter.o preyoverprinter.o \
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stockfullprinter.o stockpreyfullprinter.o stockpreyprinter.o stockprinter.o \
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likelihoodprinter.o summaryprinter.o boundlikelihood.o migrationpenalty.o \
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catchdistribution.o catchinkilos.o catchstatistics.o understocking.o \
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recapture.o recstatistics.o stockdistribution.o stomachcontent.o \
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surveydistribution.o surveyindices.o sionstep.o sibyacousticonstep.o \
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sibyageonstep.o sibyfleetonstep.o sibylengthonstep.o sibyeffortonstep.o \
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agomez |
20 |
optinfobfgs.o optinfohooke.o optinfosimann.o optinfopso.o bfgs.o hooke.o simann.o pso.o\
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agomez |
1 |
addresskeepervector.o addresskeepermatrix.o intmatrix.o doublematrix.o \
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agebandmatrixptrvector.o agebandmatrixptrmatrix.o agebandmatrixratioptrvector.o \
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doublematrixptrvector.o doublematrixptrmatrix.o timevariablevector.o \
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formulavector.o formulamatrix.o formulamatrixptrvector.o charptrmatrix.o \
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popinfovector.o popinfomatrix.o popinfoindexvector.o suitfuncptrvector.o \
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popratiovector.o popratiomatrix.o popratioindexvector.o fleetptrvector.o \
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baseclassptrvector.o conversionindexptrvector.o likelihoodptrvector.o \
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predatorptrvector.o preyptrvector.o printerptrvector.o stockptrvector.o \
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migrationareaptrvector.o rectangleptrvector.o otherfoodptrvector.o \
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tagptrvector.o optinfoptrvector.o errorhandler.o modelvariablevector.o \
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ulcessvp |
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stockvariable.o modelvariable.o migrationproportion.o matrix.o
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ulcessvp |
11 |
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GADGETCLASSES = agebandmatrixmemberfunctions.cc grow.cc growermemberfunctions.cc
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agomez |
1 |
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SLAVEOBJECTS = netdata.o slavecommunication.o pvmconstants.o
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GADGETINPUT = intvector.o doublevector.o charptrvector.o initialinputfile.o \
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commentstream.o parameter.o parametervector.o strstack.o
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LDFLAGS = $(CXXFLAGS) $(LIBDIRS) $(LIBRARIES)
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ulcessvp |
11 |
partial : $(OBJECTS)
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$(CXX) -c $(LDFLAGS) $(GADGETCLASSES)
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agomez |
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gadget : $(OBJECTS)
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$(CXX) -o $(GADGET) $(OBJECTS) $(LDFLAGS)
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## you need root permission to be able to do this ...
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install : $(GADGET)
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strip $(GADGET)
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cp $(GADGET) /usr/local/bin/
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cp gadget.1 /usr/local/man/man1/
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##########################################################################
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# The following line is needed to create the gadget input library
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# for newer versions of paramin. To create this library, you need
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# to type "make libgadgetinput.a" *before* you compile paramin
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##########################################################################
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EXTRAINPUT = optinfoptrvector.o doublematrix.o runid.o global.o errorhandler.o
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libgadgetinput.a : $(GADGETINPUT) $(EXTRAINPUT)
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ar rs libgadgetinput.a $?
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clean :
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rm -f $(OBJECTS) libgadgetinput.a
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depend :
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$(CXX) -M -MM $(CXXFLAGS) *.cc
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# DO NOT DELETE THIS LINE -- make depend depends on it.
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