This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012) (format=pdflatex 2012.6.28) 15 AUG 2012 10:12 entering extended mode restricted \write18 enabled. %&-line parsing enabled. **userguide.tex (./userguide.tex LaTeX2e <2011/06/27> Babel and hyphenation patterns for english, dumylang, nohyphenation, lo aded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo File: bk10.clo 2007/10/19 v1.4h Standard LaTeX file (size option) ) \c@part=\count79 \c@chapter=\count80 \c@section=\count81 \c@subsection=\count82 \c@subsubsection=\count83 \c@paragraph=\count84 \c@subparagraph=\count85 \c@figure=\count86 \c@table=\count87 \abovecaptionskip=\skip41 \belowcaptionskip=\skip42 \bibindent=\dimen102 ) (/usr/share/texlive/texmf-dist/tex/latex/a4wide/a4wide.sty Package: a4wide 1994/08/30 (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty Package: a4 2004/04/15 v1.2g A4 based page layout )) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty Package: amsmath 2000/07/18 v2.13 AMS math features \@mathmargin=\skip43 For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty Package: amstext 2000/06/29 v2.01 (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty File: amsgen.sty 1999/11/30 v2.0 \@emptytoks=\toks14 \ex@=\dimen103 )) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty Package: amsbsy 1999/11/29 v1.2d \pmbraise@=\dimen104 ) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty Package: amsopn 1999/12/14 v2.01 operator names ) \inf@bad=\count88 LaTeX Info: Redefining \frac on input line 211. \uproot@=\count89 \leftroot@=\count90 LaTeX Info: Redefining \overline on input line 307. \classnum@=\count91 \DOTSCASE@=\count92 LaTeX Info: Redefining \ldots on input line 379. LaTeX Info: Redefining \dots on input line 382. LaTeX Info: Redefining \cdots on input line 467. \Mathstrutbox@=\box26 \strutbox@=\box27 \big@size=\dimen105 LaTeX Font Info: Redeclaring font encoding OML on input line 567. LaTeX Font Info: Redeclaring font encoding OMS on input line 568. \macc@depth=\count93 \c@MaxMatrixCols=\count94 \dotsspace@=\muskip10 \c@parentequation=\count95 \dspbrk@lvl=\count96 \tag@help=\toks15 \row@=\count97 \column@=\count98 \maxfields@=\count99 \andhelp@=\toks16 \eqnshift@=\dimen106 \alignsep@=\dimen107 \tagshift@=\dimen108 \tagwidth@=\dimen109 \totwidth@=\dimen110 \lineht@=\dimen111 \@envbody=\toks17 \multlinegap=\skip44 \multlinetaggap=\skip45 \mathdisplay@stack=\toks18 LaTeX Info: Redefining \[ on input line 2666. LaTeX Info: Redefining \] on input line 2667. ) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty Package: fontenc 2005/09/27 v1.99g Standard LaTeX package (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file LaTeX Font Info: Redeclaring font encoding T1 on input line 43. )) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/palatino.sty Package: palatino 2005/04/12 PSNFSS-v9.2a (SPQR) ) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty \fancy@headwidth=\skip46 \f@ncyO@elh=\skip47 \f@ncyO@erh=\skip48 \f@ncyO@olh=\skip49 \f@ncyO@orh=\skip50 \f@ncyO@elf=\skip51 \f@ncyO@erf=\skip52 \f@ncyO@olf=\skip53 \f@ncyO@orf=\skip54 ) No file userguide.aux. \openout1 = `userguide.aux'. LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 8. LaTeX Font Info: ... okay on input line 8. LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 8. LaTeX Font Info: ... okay on input line 8. LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 8. LaTeX Font Info: ... okay on input line 8. LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 8. LaTeX Font Info: ... okay on input line 8. LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 8. LaTeX Font Info: ... okay on input line 8. LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 8. LaTeX Font Info: ... okay on input line 8. LaTeX Font Info: Try loading font information for T1+ppl on input line 8. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ppl.fd File: t1ppl.fd 2001/06/04 font definitions for T1/ppl. ) [1 {/usr/share/texlive/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2 ] LaTeX Font Info: Font shape `T1/ppl/bx/n' in size <24.88> not available (Font) Font shape `T1/ppl/b/n' tried instead on input line 36. No file userguide.toc. \tf@toc=\write3 \openout3 = `userguide.toc'. LaTeX Font Info: Font shape `T1/ppl/bx/n' in size <10> not available (Font) Font shape `T1/ppl/b/n' tried instead on input line 38. [1 ] [2 ] Chapter 1. LaTeX Font Info: Font shape `T1/ppl/bx/n' in size <20.74> not available (Font) Font shape `T1/ppl/b/n' tried instead on input line 41. LaTeX Font Info: Font shape `T1/ppl/bx/n' in size <14.4> not available (Font) Font shape `T1/ppl/b/n' tried instead on input line 44. LaTeX Font Info: Try loading font information for OMS+ppl on input line 48. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsppl.fd File: omsppl.fd ) LaTeX Font Info: Font shape `OMS/ppl/m/n' in size <10> not available (Font) Font shape `OMS/cmsy/m/n' tried instead on input line 48. [1 ] LaTeX Font Info: Try loading font information for T1+pcr on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd File: t1pcr.fd 2001/06/04 font definitions for T1/pcr. ) [2] Overfull \hbox (15.19916pt too wide) in paragraph at lines 117--118 []\T1/ppl/m/n/10 the di-rec-tory spec-i-fied by the Linux en-vi-ron-ment vari-a ble called ''GAD-GET_WORKING_DIR'', [] [3] LaTeX Warning: Reference `chap:print' on page 4 undefined on input line 135. LaTeX Warning: Reference `chap:param' on page 4 undefined on input line 162. LaTeX Warning: Reference `chap:optim' on page 4 undefined on input line 167. LaTeX Warning: Reference `sec:mainfile' on page 4 undefined on input line 172. [4] LaTeX Warning: Reference `chap:output' on page 5 undefined on input line 178. LaTeX Warning: Reference `chap:output' on page 5 undefined on input line 183. LaTeX Warning: Reference `sec:logoutput' on page 5 undefined on input line 198. LaTeX Warning: Reference `sec:repeat' on page 5 undefined on input line 208. [5] [6] Chapter 2. LaTeX Font Info: Font shape `T1/ppl/bx/n' in size <12> not available (Font) Font shape `T1/ppl/b/n' tried instead on input line 266. Overfull \hbox (3.64015pt too wide) in paragraph at lines 273--274 []\T1/ppl/m/n/10 where the $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 numerical part$\O ML/cmm/m/it/10 >$ \T1/ppl/m/n/10 con-sists of the (op-tional) ini-tial value fo r the switch, and the $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 name$\OML/cmm/m/it/10 >$ [] [7 ] LaTeX Warning: Reference `chap:param' on page 8 undefined on input line 276. [8] Chapter 3. Overfull \hbox (20.9344pt too wide) in paragraph at lines 326--327 \T1/ppl/m/n/10 The main Gad-get in-put file is usu-ally called ''main'', un-les s it is spec-i-fied with the ''-main $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 filenam e$\OML/cmm/m/it/10 >$\T1/ppl/m/n/10 '' [] [9 ] [10] [11] [12] Overfull \hbox (11.08015pt too wide) in paragraph at lines 522--523 []\T1/ppl/m/n/10 This ex-am-ple shows that the the pa-ram-e-ter ''grow1995'' is to be used for growth in 1995, ''grow1996'' [] [13] [14 ] Chapter 4. [15] LaTeX Warning: Reference `sec:stocknatmort' on page 16 undefined on input line 624. LaTeX Warning: Reference `eq:growth1l' on page 16 undefined on input line 645. LaTeX Warning: Reference `eq:growth1w' on page 16 undefined on input line 645. [16] LaTeX Warning: Reference `sec:consumption' on page 17 undefined on input line 6 58. LaTeX Warning: Reference `eq:growth3w' on page 17 undefined on input line 682. LaTeX Warning: Reference `eq:growth3lc' on page 17 undefined on input line 682. LaTeX Warning: Reference `eq:growth3la' on page 17 undefined on input line 711. LaTeX Warning: Reference `eq:growth3lb' on page 17 undefined on input line 711. LaTeX Warning: Reference `eq:growth4w' on page 17 undefined on input line 722. LaTeX Warning: Reference `eq:growth4lc' on page 17 undefined on input line 722. [17] LaTeX Warning: Reference `sec:consumption' on page 18 undefined on input line 7 47. LaTeX Warning: Reference `sec:consumption' on page 18 undefined on input line 7 49. LaTeX Warning: Reference `eq:growth5w' on page 18 undefined on input line 761. LaTeX Warning: Reference `subsec:growth3' on page 18 undefined on input line 76 1. LaTeX Warning: Reference `eq:growth3lc' on page 18 undefined on input line 761. [18] LaTeX Warning: Reference `eq:growth6' on page 19 undefined on input line 788. LaTeX Warning: Reference `eq:growth7' on page 19 undefined on input line 812. LaTeX Warning: Reference `eq:growth8l' on page 19 undefined on input line 836. LaTeX Warning: Reference `eq:growth8w' on page 19 undefined on input line 836. [19] LaTeX Warning: Reference `eq:growth8l' on page 20 undefined on input line 856. Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 868. LaTeX Warning: Reference `eq:betabin2' on page 20 undefined on input line 871. [20] LaTeX Warning: Reference `eq:betabin3' on page 21 undefined on input line 887. LaTeX Warning: Reference `eq:natmort' on page 21 undefined on input line 893. LaTeX Warning: Reference `sec:stockpredator' on page 21 undefined on input line 916. [21] LaTeX Warning: Reference `sec:stockinitial' on page 22 undefined on input line 931. LaTeX Warning: Reference `sec:suitability' on page 22 undefined on input line 9 41. LaTeX Warning: Reference `eq:totalcons' on page 22 undefined on input line 944. LaTeX Warning: Reference `sec:stockprey' on page 22 undefined on input line 967 . LaTeX Warning: Reference `sec:suitability' on page 22 undefined on input line 9 70. [22] LaTeX Warning: Reference `eq:totalcons' on page 23 undefined on input line 975. LaTeX Warning: Reference `sec:suitability' on page 23 undefined on input line 9 75. LaTeX Warning: Reference `eq:preycons' on page 23 undefined on input line 975. LaTeX Warning: Reference `chap:other' on page 23 undefined on input line 975. LaTeX Warning: Reference `eq:preycons' on page 23 undefined on input line 978. LaTeX Warning: Reference `chap:fleet' on page 23 undefined on input line 978. LaTeX Warning: Reference `eq:maxcons' on page 23 undefined on input line 989. LaTeX Warning: Reference `eq:feedlevel' on page 23 undefined on input line 992. [23] [24] LaTeX Warning: Reference `sec:fleetsuit' on page 25 undefined on input line 111 4. [25] [26] LaTeX Warning: Reference `eq:wlen' on page 27 undefined on input line 1169. LaTeX Warning: Reference `sec:stockmature' on page 27 undefined on input line 1 207. [27] [28] LaTeX Warning: Reference `sec:stockmove' on page 29 undefined on input line 129 1. [29] LaTeX Warning: Reference `eq:mat1a' on page 30 undefined on input line 1314. LaTeX Warning: Reference `eq:mat1b' on page 30 undefined on input line 1314. LaTeX Warning: Reference `eq:mat3' on page 30 undefined on input line 1333. LaTeX Warning: Reference `eq:mat4' on page 30 undefined on input line 1350. [30] LaTeX Warning: Reference `eq:mat2' on page 31 undefined on input line 1365. LaTeX Warning: Reference `sec:stockrenew' on page 31 undefined on input line 13 92. LaTeX Warning: Reference `sec:stockmature' on page 31 undefined on input line 1 400. [31] LaTeX Warning: Reference `sec:stockspawn' on page 32 undefined on input line 14 09. LaTeX Warning: Reference `sec:stockinitial' on page 32 undefined on input line 1422. [32] LaTeX Warning: Reference `sec:stockstray' on page 33 undefined on input line 14 83. LaTeX Warning: Reference `eq:spawn1' on page 33 undefined on input line 1490. LaTeX Warning: Reference `eq:spawn2' on page 33 undefined on input line 1490. [33] LaTeX Warning: Reference `eq:spawn1' on page 34 undefined on input line 1509. LaTeX Warning: Reference `eq:spawn2' on page 34 undefined on input line 1509. LaTeX Warning: Reference `sec:stockrenew' on page 34 undefined on input line 15 25. LaTeX Warning: Reference `sec:stockrenew' on page 34 undefined on input line 15 28. LaTeX Warning: Reference `eq:wlen' on page 34 undefined on input line 1528. [34] LaTeX Warning: Reference `eq:ssb' on page 35 undefined on input line 1582. LaTeX Warning: Reference `eq:ssb' on page 35 undefined on input line 1595. [35] LaTeX Warning: Reference `sec:suitability' on page 36 undefined on input line 1 608. LaTeX Warning: Reference `sec:stockspawn' on page 36 undefined on input line 16 14. [36] LaTeX Warning: Reference `sec:stockmove' on page 37 undefined on input line 167 6. [37] [38 ] Chapter 5. LaTeX Warning: Reference `sec:recaptures' on page 39 undefined on input line 16 89. LaTeX Warning: Reference `eq:tagloss' on page 39 undefined on input line 1717. [39] [40] Chapter 6. [41 ] [42 ] Chapter 7. LaTeX Warning: Reference `eq:tcons' on page 43 undefined on input line 1808. LaTeX Warning: Reference `sec:fleetsuit' on page 43 undefined on input line 181 8. [43] LaTeX Warning: Reference `eq:ncons' on page 44 undefined on input line 1838. LaTeX Warning: Reference `sec:fleetsuit' on page 44 undefined on input line 184 7. LaTeX Warning: Reference `eq:lcons' on page 44 undefined on input line 1867. [44] LaTeX Warning: Reference `sec:fleetsuit' on page 45 undefined on input line 187 8. LaTeX Warning: Reference `eq:econs' on page 45 undefined on input line 1901. LaTeX Warning: Reference `sec:fleetsuit' on page 45 undefined on input line 191 3. [45] LaTeX Warning: Reference `sec:linearfleet' on page 46 undefined on input line 1 934. LaTeX Warning: Reference `eq:lcons' on page 46 undefined on input line 1946. LaTeX Warning: Reference `sec:linearfleet' on page 46 undefined on input line 1 946. [46] LaTeX Warning: Reference `sec:suitability' on page 47 undefined on input line 1 989. [47] [48] Chapter 8. LaTeX Warning: Reference `sec:simann' on page 49 undefined on input line 2048. LaTeX Warning: Reference `sec:hooke' on page 49 undefined on input line 2048. LaTeX Warning: Reference `sec:bfgs' on page 49 undefined on input line 2048. [49 ] LaTeX Warning: Reference `eq:bound' on page 50 undefined on input line 2061. Underfull \hbox (badness 10000) in paragraph at lines 2072--2079 [] [50] [51] LaTeX Warning: Reference `eq:catchdist4' on page 52 undefined on input line 218 5. [52] LaTeX Warning: Reference `eq:catchdist4' on page 53 undefined on input line 219 6. LaTeX Warning: Reference `eq:catchdist1' on page 53 undefined on input line 219 9. LaTeX Warning: Reference `eq:catchdist2' on page 53 undefined on input line 221 0. LaTeX Warning: Reference `eq:catchdist3' on page 53 undefined on input line 222 1. LaTeX Warning: Reference `eq:catchdist7' on page 53 undefined on input line 223 2. [53] LaTeX Warning: Reference `eq:catchdist5' on page 54 undefined on input line 224 3. LaTeX Warning: Reference `eq:cdsigma1' on page 54 undefined on input line 2255. LaTeX Warning: Reference `eq:cdsigma2' on page 54 undefined on input line 2255. LaTeX Warning: Reference `eq:cdsigma2' on page 54 undefined on input line 2269. LaTeX Warning: Reference `eq:catchdist6a' on page 54 undefined on input line 22 87. LaTeX Warning: Reference `eq:catchdist6b' on page 54 undefined on input line 22 87. [54] [55] LaTeX Warning: Reference `eq:catchstat1' on page 56 undefined on input line 234 9. Overfull \hbox (2.72078pt too wide) in paragraph at lines 2368--2369 []\T1/ppl/m/n/10 where $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 number$\OML/cmm/m/it/ 10 >$ \T1/ppl/m/n/10 is the num-ber of sam-ples for the timestep/area/age com-b i-na-tion, and $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 mean$\OML/cmm/m/it/10 >$ [] LaTeX Warning: Reference `eq:catchstat2' on page 56 undefined on input line 237 1. LaTeX Warning: Reference `eq:catchstat3' on page 56 undefined on input line 239 3. [56] LaTeX Warning: Reference `eq:catchstat4' on page 57 undefined on input line 241 5. Overfull \hbox (2.72078pt too wide) in paragraph at lines 2433--2434 []\T1/ppl/m/n/10 where $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 number$\OML/cmm/m/it/ 10 >$ \T1/ppl/m/n/10 is the num-ber of sam-ples for the timestep/area/age com-b i-na-tion, and $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 mean$\OML/cmm/m/it/10 >$ [] LaTeX Warning: Reference `eq:catchstat5' on page 57 undefined on input line 243 6. [57] Overfull \hbox (2.72078pt too wide) in paragraph at lines 2454--2455 []\T1/ppl/m/n/10 where $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 number$\OML/cmm/m/it/ 10 >$ \T1/ppl/m/n/10 is the num-ber of sam-ples for the timestep/area/age com-b i-na-tion, and $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 mean$\OML/cmm/m/it/10 >$ [] [58] LaTeX Warning: Reference `eq:stockdist2' on page 59 undefined on input line 250 3. LaTeX Warning: Reference `eq:stockdist1' on page 59 undefined on input line 251 4. LaTeX Warning: Reference `eq:surveyindex' on page 59 undefined on input line 25 25. [59] [60] [61] LaTeX Warning: Reference `subsec:sibylength' on page 62 undefined on input line 2702. [62] LaTeX Warning: Reference `subsec:sibylength' on page 63 undefined on input line 2732. LaTeX Warning: Reference `subsec:sibylength' on page 63 undefined on input line 2761. [63] LaTeX Warning: Reference `subsec:sibylength' on page 64 undefined on input line 2790. LaTeX Warning: Reference `sec:suitability' on page 64 undefined on input line 2 815. [64] LaTeX Warning: Reference `eq:surveydistfit1' on page 65 undefined on input line 2846. LaTeX Warning: Reference `eq:surveydistfit1' on page 65 undefined on input line 2857. LaTeX Warning: Reference `eq:surveydist1' on page 65 undefined on input line 28 68. [65] LaTeX Warning: Reference `eq:surveydist2' on page 66 undefined on input line 28 79. LaTeX Warning: Reference `eq:surveydist3' on page 66 undefined on input line 28 90. LaTeX Warning: Reference `eq:surveydist4' on page 66 undefined on input line 29 01. [66] Overfull \hbox (5.62071pt too wide) in paragraph at lines 2963--2964 \T1/ppl/m/n/10 timestep/area com-bi-na-tion, where $\OML/cmm/m/it/10 <$\T1/ppl/ m/n/10 prey$\OML/cmm/m/it/10 >$ \T1/ppl/m/n/10 is de-fined in the prey ag-gre-g a-tion file, and $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 predator$\OML/cmm/m/it/10 > $ [] LaTeX Warning: Reference `eq:stomach1' on page 67 undefined on input line 2966. [67] LaTeX Warning: Reference `eq:recap1' on page 68 undefined on input line 3024. LaTeX Warning: Reference `sec:catchstat' on page 68 undefined on input line 303 5. [68] LaTeX Warning: Reference `eq:recstat1' on page 69 undefined on input line 3062. Overfull \hbox (1.19075pt too wide) in paragraph at lines 3081--3082 []\T1/ppl/m/n/10 where $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 number$\OML/cmm/m/it/ 10 >$ \T1/ppl/m/n/10 is the num-ber of sam-ples for the tag/timestep/area com-b i-na-tion, and $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 mean$\OML/cmm/m/it/10 >$ [] LaTeX Warning: Reference `eq:recstat2' on page 69 undefined on input line 3084. [69] LaTeX Warning: Reference `eq:recstat3' on page 70 undefined on input line 3106. Overfull \hbox (1.19075pt too wide) in paragraph at lines 3124--3125 []\T1/ppl/m/n/10 where $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 number$\OML/cmm/m/it/ 10 >$ \T1/ppl/m/n/10 is the num-ber of sam-ples for the tag/timestep/area com-b i-na-tion, and $\OML/cmm/m/it/10 <$\T1/ppl/m/n/10 mean$\OML/cmm/m/it/10 >$ [] [70] LaTeX Warning: Reference `chap:fleet' on page 71 undefined on input line 3151. [71] LaTeX Warning: Reference `eq:catchtons' on page 72 undefined on input line 3198 . [72] Chapter 9. [73 ] LaTeX Warning: Reference `chap:order' on page 74 undefined on input line 3262. [74] LaTeX Warning: Reference `chap:order' on page 75 undefined on input line 3295. LaTeX Warning: Reference `chap:order' on page 75 undefined on input line 3330. [75] [76] Overfull \hbox (17.93793pt too wide) in paragraph at lines 3404--3405 []\T1/ppl/m/n/10 The out-put that is gen-er-ated from this printer type is a fi le con-tain-ing the fol-low-ing over-consumption [] Overfull \hbox (17.93793pt too wide) in paragraph at lines 3435--3436 []\T1/ppl/m/n/10 The out-put that is gen-er-ated from this printer type is a fi le con-tain-ing the fol-low-ing over-consumption [] [77] [78] [79] LaTeX Warning: Reference `sec:catchdist' on page 80 undefined on input line 355 3. LaTeX Warning: Reference `sec:catchstat' on page 80 undefined on input line 355 7. LaTeX Warning: Reference `sec:surveyindices' on page 80 undefined on input line 3561. [80] Chapter 10. LaTeX Warning: Reference `sec:whatdoeshash' on page 81 undefined on input line 3588. [81 ] [82 ] Chapter 11. [83] [84] LaTeX Warning: Reference `eq:metropolis' on page 85 undefined on input line 366 9. [85] [86] LaTeX Warning: Reference `eq:metropolis' on page 87 undefined on input line 372 3. [87] LaTeX Warning: Reference `eq:vm' on page 88 undefined on input line 3744. [88] LaTeX Warning: Reference `eq:armijo' on page 89 undefined on input line 3775. [89] LaTeX Warning: Reference `eq:armijo' on page 90 undefined on input line 3813. LaTeX Warning: Reference `eq:grad' on page 90 undefined on input line 3821. [90] LaTeX Warning: Reference `subsec:hookepar' on page 91 undefined on input line 3 874. LaTeX Warning: Reference `subsec:simannpar' on page 91 undefined on input line 3874. LaTeX Warning: Reference `subsec:bfgspar' on page 91 undefined on input line 38 74. [91] [92] Chapter 12. LaTeX Warning: Reference `chap:print' on page 93 undefined on input line 3889. [93 ] [94] Chapter 13. [95 ] LaTeX Warning: Reference `chap:param' on page 96 undefined on input line 4012. LaTeX Warning: Reference `chap:param' on page 96 undefined on input line 4018. Underfull \hbox (badness 10000) in paragraph at lines 4010--4026 [] Underfull \hbox (badness 10000) in paragraph at lines 4010--4026 [] Underfull \hbox (badness 10000) in paragraph at lines 4034--4043 [] Underfull \hbox (badness 10000) in paragraph at lines 4044--4060 [] Underfull \hbox (badness 10000) in paragraph at lines 4044--4060 [] [96] [97] [98 ] Chapter 14. Underfull \hbox (badness 10000) in paragraph at lines 4089--4090 [] Underfull \hbox (badness 10000) in paragraph at lines 4091--4092 [] Underfull \hbox (badness 10000) in paragraph at lines 4093--4094 [] Underfull \hbox (badness 10000) in paragraph at lines 4095--4096 [] Underfull \hbox (badness 10000) in paragraph at lines 4097--4098 [] Underfull \hbox (badness 10000) in paragraph at lines 4099--4100 [] Underfull \hbox (badness 10000) in paragraph at lines 4101--4102 [] Underfull \hbox (badness 10000) in paragraph at lines 4103--4104 [] Underfull \hbox (badness 10000) in paragraph at lines 4105--4106 [] Underfull \hbox (badness 10000) in paragraph at lines 4107--4108 [] Underfull \hbox (badness 10000) in paragraph at lines 4109--4110 [] Underfull \hbox (badness 10000) in paragraph at lines 4111--4112 [] [99] Underfull \hbox (badness 10000) in paragraph at lines 4113--4114 [] Underfull \hbox (badness 10000) in paragraph at lines 4115--4116 [] [100] Appendix A. LaTeX Warning: Reference `sec:stockmigrate' on page 101 undefined on input line 4123. LaTeX Warning: Reference `sec:stockmature' on page 101 undefined on input line 4133. LaTeX Warning: Reference `sec:stockstray' on page 101 undefined on input line 4 137. [101 ] LaTeX Warning: Reference `sec:stockmove' on page 102 undefined on input line 41 40. [102] Appendix B. LaTeX Warning: Reference `chap:fleet' on page 103 undefined on input line 4148. LaTeX Warning: Reference `sec:suitability' on page 103 undefined on input line 4149. LaTeX Warning: Reference `sec:numberfleet' on page 103 undefined on input line 4150. LaTeX Warning: Reference `sec:stockprey' on page 103 undefined on input line 41 51. LaTeX Warning: Reference `chap:other' on page 103 undefined on input line 4151. LaTeX Warning: Reference `sec:stockmigrate' on page 103 undefined on input line 4156. LaTeX Warning: Reference `sec:consumption' on page 103 undefined on input line 4157. LaTeX Warning: Reference `sec:foodamounts' on page 103 undefined on input line 4162. LaTeX Warning: Reference `sec:effortfleet' on page 103 undefined on input line 4163. LaTeX Warning: Reference `sec:stockpreyprinter' on page 103 undefined on input line 4164. LaTeX Warning: Reference `sec:predatorpreyprinter' on page 103 undefined on inp ut line 4165. LaTeX Warning: Reference `sec:understocking' on page 103 undefined on input lin e 4170. [103 ] LaTeX Warning: Reference `sec:quotafleet' on page 104 undefined on input line 4 175. LaTeX Warning: Reference `subsec:sibyacoustic' on page 104 undefined on input l ine 4176. LaTeX Warning: Reference `subsec:sibyeffort' on page 104 undefined on input lin e 4177. LaTeX Warning: Reference `sec:likelihoodprinter' on page 104 undefined on input line 4178. LaTeX Warning: Reference `sec:consumption' on page 104 undefined on input line 4179. [104] (./userguide.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) Here is how much of TeX's memory you used: 1530 strings out of 495063 17592 string characters out of 3182201 67126 words of memory out of 3000000 4725 multiletter control sequences out of 15000+200000 29755 words of font info for 60 fonts, out of 3000000 for 9000 14 hyphenation exceptions out of 8191 32i,17n,48p,1415b,420s stack positions out of 5000i,500n,10000p,200000b,50000s {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy7.pfb> Output written on userguide.pdf (108 pages, 407312 bytes). PDF statistics: 413 PDF objects out of 1000 (max. 8388607) 285 compressed objects within 3 object streams 0 named destinations out of 1000 (max. 500000) 1 words of extra memory for PDF output out of 10000 (max. 10000000)